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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17652-RA through 18771 annotations produced 1 hits



(CG17652):

Annotation Number : CG17652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031361
Gbrowse : chr2L:1731402-1732263 (-) // 100.0 //
Probeset : 1630565_at
Accessions : protein= NP_608617;, nucleotide= NM_134773;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0031361.
BioGrid reports that CG17652 interacts with CG6733 CG4617 .
VDRC has 1 RNAi stocks for FBgn0031361 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 34 of 4 0.90None
Head53 ± 24 of 4 0.80None
Eye35 ± 44 of 4 0.53Down
Thoracicoabdominal ganglion50 ± 14 of 4 0.80None
Salivary gland44 ± 43 of 4 0.66Down
Crop55 ± 24 of 4 0.80None
Midgut66 ± 64 of 4 1.00None
Tubule63 ± 24 of 4 0.90None
Hindgut57 ± 34 of 4 0.90None
Heart63 ± 64 of 4 0.95None
Fat body71 ± 34 of 4 1.07None
Ovary87 ± 24 of 4 1.30Up
Testis24 ± 24 of 4 0.40Down
Male accessory glands74 ± 74 of 4 1.10None
Virgin spermatheca49 ± 24 of 4 0.74Down
Mated spermatheca60 ± 54 of 4 0.89None
Adult carcass54 ± 34 of 4 0.80None
Larval CNS55 ± 54 of 4 0.83None
Larval Salivary gland61 ± 64 of 4 0.91None
Larval midgut57 ± 34 of 4 0.86None
Larval tubule128 ± 54 of 4 1.90Up
Larval hindgut43 ± 14 of 4 0.65Down
Larval fat body35 ± 30 of 4 0.50Down
Larval trachea68 ± 54 of 4 1.02None
Larval carcass44 ± 44 of 4 0.66Down
S2 cells (growing)89 ± 14 of 4 1.33Up
Whole fly67 ± 54 of 4

Looking for CG17652-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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