FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17657-RA through 18771 annotations produced 1 hits

fritz (frtz):

Annotation Number : CG17657
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086698
Gbrowse : chr2L:1711298-1715861 (-) // 100.0 //
Probeset : 1630378_at
Accessions : protein= NP_608614;, nucleotide= NM_134770;
FlyMine data for FBgn0086698.
VDRC has 2 RNAi stocks for FBgn0086698 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	30 ± 1	4 of 4	0.40	Down
Head	64 ± 3	4 of 4	0.80	None
Eye	38 ± 4	4 of 4	0.50	Down
Thoracicoabdominal ganglion	34 ± 2	4 of 4	0.40	Down
Salivary gland	120 ± 5	4 of 4	1.57	Up
Crop	89 ± 9	4 of 4	1.20	None
Midgut	51 ± 4	4 of 4	0.70	Down
Tubule	80 ± 2	4 of 4	1.00	None
Hindgut	68 ± 2	4 of 4	0.90	None
Heart	41 ± 1	4 of 4	0.54	Down
Fat body	60 ± 7	4 of 4	0.80	Down
Ovary	163 ± 2	4 of 4	2.10	Up
Testis	17 ± 0	4 of 4	0.20	Down
Male accessory glands	53 ± 2	4 of 4	0.70	Down
Virgin spermatheca	65 ± 1	4 of 4	0.86	None
Mated spermatheca	68 ± 4	4 of 4	0.90	None
Adult carcass	87 ± 5	4 of 4	1.10	None
Larval CNS	59 ± 6	4 of 4	0.77	Down
Larval Salivary gland	90 ± 4	4 of 4	1.18	None
Larval midgut	52 ± 3	4 of 4	0.68	Down
Larval tubule	56 ± 5	4 of 4	0.70	Down
Larval hindgut	68 ± 3	4 of 4	0.89	None
Larval fat body	54 ± 3	4 of 4	0.70	Down
Larval trachea	55 ± 5	4 of 4	0.72	Down
Larval carcass	52 ± 4	4 of 4	0.68	Down
S2 cells (growing)	127 ± 1	4 of 4	1.66	Up
Whole fly	76 ± 4	4 of 4

Looking for CG17657-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720