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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17664-RA through 18771 annotations produced 1 hits



(CG17664):

Annotation Number : CG17664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034883
Gbrowse : chr2R:19491248-19492665 (-) // 100.0 //
Probeset : 1629642_a_at
Accessions : protein= NP_611811;, nucleotide= NM_137967;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred
FlyMine data for FBgn0034883.
BDGP gene expression has embryonic in situ data for CG17664: 5 pix of staining in 1 body parts.
Homophila reports that CG17664 is a close match (3e-14) to human gene AQP3 (NP_004916), a gene associated with [Blood group GIL], 607457 (3).
TRiP has 1 RNAi stocks for FBgn0034883 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034883 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.10Down
Head17 ± 32 of 4 0.20Down
Eye5 ± 21 of 4 0.07Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.10Down
Salivary gland22 ± 22 of 4 0.29Down
Crop13 ± 30 of 4 0.20Down
Midgut378 ± 204 of 4 4.80Up
Tubule1275 ± 344 of 416.30Up
Hindgut44 ± 24 of 4 0.60None
Heart26 ± 24 of 4 0.34Down
Fat body27 ± 32 of 4 0.35Down
Ovary3 ± 10 of 4 0.00Down
Testis5 ± 21 of 4 0.10Down
Male accessory glands348 ± 64 of 4 4.50Up
Virgin spermatheca32 ± 24 of 4 0.42Down
Mated spermatheca36 ± 24 of 4 0.47Down
Adult carcass26 ± 20 of 4 0.30Down
Larval CNS9 ± 40 of 4 0.13Down
Larval Salivary gland175 ± 94 of 4 2.24Up
Larval midgut234 ± 124 of 4 3.00Up
Larval tubule97 ± 104 of 4 1.20None
Larval hindgut20 ± 22 of 4 0.26Down
Larval fat body8 ± 30 of 4 0.10Down
Larval trachea60 ± 124 of 4 0.77None
Larval carcass88 ± 34 of 4 1.14None
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly78 ± 114 of 4

Looking for CG17664-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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