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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17666-RA through 18771 annotations produced 1 hits



(CG17666):

Annotation Number : CG17666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036311
Gbrowse : chr3L:12774424-12777478 (+) // 100.0 //
Probeset : 1631081_a_at
Accessions : protein= NP_648599; /// NP_729831;, nucleotide= NM_140342; /// NM_168515;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036311.
BDGP gene expression has embryonic in situ data for CG17666: 4 pix of staining in 1 body parts.
BioGrid reports that CG17666 interacts with CG31122 CG3851 CG4151 CG5011 CG7809 CG9193 CG9653 CG9663 CG9768 CG17836 CG18180 CG18617 CG2127 CG2144 CG2851 CG3056 CG3078 CG31211 CG3166 CG32096 CG32156 CG32183 CG32369 CG32705 CG33115 CG3474 CG3642 CG3758 CG14578 CG17420 CG4087 CG4116 CG4276 CG4767 CG4863 CG4922 CG5080 CG5225 CG5410 CG5494 CG5709 CG5827 CG5866 CG5923 CG6315 CG6534 CG6619 CG6707 CG6972 CG7605 CG8057 CG8458 CG8568 CG8910 CG8981 CG9075 CG9526 CG17757 .
VDRC has 2 RNAi stocks for FBgn0036311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 0.10Down
Head7 22 of 4 0.10Down
Eye9 14 of 4 0.07Down
Thoracicoabdominal ganglion8 00 of 4 0.10Down
Salivary gland10 30 of 4 0.07Down
Crop10 12 of 4 0.10Down
Midgut5 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut6 01 of 4 0.00Down
Heart6 11 of 4 0.05Down
Fat body10 41 of 4 0.08Down
Ovary3 01 of 4 0.00Down
Testis1663 284 of 412.00Up
Male accessory glands5 30 of 4 0.00Down
Virgin spermatheca8 00 of 4 0.06Down
Mated spermatheca12 02 of 4 0.09Down
Adult carcass16 53 of 4 0.10Down
Larval CNS9 12 of 4 0.06Down
Larval Salivary gland11 12 of 4 0.08Down
Larval midgut9 10 of 4 0.07Down
Larval tubule4 00 of 4 0.00Down
Larval hindgut6 10 of 4 0.04Down
Larval fat body124 633 of 4 0.90None
Larval trachea9 92 of 4 0.07Down
Larval carcass13 11 of 4 0.09Down
S2 cells (growing)11 02 of 4 0.08Down
Whole fly139 64 of 4

Looking for CG17666-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime