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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17678-RA through 18771 annotations produced 2 hits



concertina (cta):

Annotation Number : CG17678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000384
Gbrowse : chr2L:22874533-22885075 (+) // 99.72 // /// chr2L:22841781-22843210 (-) // 55.31 //
Probeset : 1632931_at
Accessions : protein= NP_001036421;, nucleotide= NM_001042956;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrim
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0000384.
Homophila reports that CG17678 is a close match (1e-54) to human gene AHO;GNAS;GNAS1;GPSA;PHP1A;PHP1B;POH (NP_001070956), a gene associated with Acromegaly, 102200 (3);McCune-Albright syndrome, 174800 (3);Osseous heteroplasia, progressive, 166350 (3);Pituitary ACTH secreting adenoma (3);Prolonged bleeding time, brachydac;Pseudohypoparathyroidism, type Ia, 103580 (3);Pseudohypoparathyroidism, type Ib, 603233 (3);Somatotrophinoma (3).
BioGrid reports that CG17678 interacts with CG8416 .
TRiP has 2 RNAi stocks for FBgn0000384 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 ± 34 of 4 0.40Down
Head76 ± 34 of 4 0.30Down
Eye79 ± 44 of 4 0.31Down
Thoracicoabdominal ganglion94 ± 44 of 4 0.40Down
Salivary gland122 ± 94 of 4 0.48Down
Crop104 ± 34 of 4 0.40Down
Midgut95 ± 44 of 4 0.40Down
Tubule51 ± 24 of 4 0.20Down
Hindgut73 ± 24 of 4 0.30Down
Heart57 ± 24 of 4 0.23Down
Fat body110 ± 124 of 4 0.44Down
Ovary764 ± 224 of 4 3.00Up
Testis63 ± 34 of 4 0.30Down
Male accessory glands214 ± 84 of 4 0.80None
Virgin spermatheca76 ± 74 of 4 0.30Down
Mated spermatheca78 ± 44 of 4 0.31Down
Adult carcass72 ± 54 of 4 0.30Down
Larval CNS257 ± 244 of 4 1.01None
Larval Salivary gland202 ± 54 of 4 0.80None
Larval midgut149 ± 54 of 4 0.59Down
Larval tubule114 ± 74 of 4 0.50Down
Larval hindgut131 ± 34 of 4 0.52Down
Larval fat body163 ± 124 of 4 0.60Down
Larval trachea135 ± 94 of 4 0.53Down
Larval carcass138 ± 54 of 4 0.54Down
S2 cells (growing)232 ± 44 of 4 0.92None
Whole fly253 ± 214 of 4



/// concertina (CG40005 /// cta):

Annotation Number : CG40005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000384 /// FBgn0058005
Gbrowse : chr2L:22884126-22884675 (+) // 97.69 // /// chr2L:22842024-22842567 (-) // 100.0 //
Probeset : 1634527_s_at
Accessions : protein= NP_001036419; /// NP_001036420; /// NP_001036421;, nucleotide= NM_001042954; /// NM_001042955; /// NM_001042956;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity /// 0005834 // heterotrim
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0000384 /// FBgn0058005.
Homophila reports that CG40005 is a close match (6e-22) to human gene AHO;GNAS;GNAS1;GPSA;PHP1A;PHP1B;POH (NP_536351), a gene associated with Acromegaly, 102200 (3);McCune-Albright syndrome, 174800 (3);Osseous heteroplasia, progressive, 166350 (3);Pituitary ACTH secreting adenoma (3);Prolonged bleeding time, brachydac;Pseudohypoparathyroidism, type Ia, 103580 (3);Pseudohypoparathyroidism, type Ib, 603233 (3);Somatotrophinoma (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 ± 24 of 4 0.40Down
Head61 ± 64 of 4 0.30Down
Eye66 ± 24 of 4 0.30Down
Thoracicoabdominal ganglion69 ± 44 of 4 0.30Down
Salivary gland119 ± 64 of 4 0.55Down
Crop99 ± 74 of 4 0.50Down
Midgut63 ± 24 of 4 0.30Down
Tubule41 ± 24 of 4 0.20Down
Hindgut55 ± 14 of 4 0.30Down
Heart55 ± 34 of 4 0.25Down
Fat body92 ± 224 of 4 0.42Down
Ovary598 ± 44 of 4 2.70Up
Testis77 ± 34 of 4 0.40Down
Male accessory glands185 ± 44 of 4 0.80Down
Virgin spermatheca69 ± 34 of 4 0.31Down
Mated spermatheca74 ± 14 of 4 0.34Down
Adult carcass70 ± 44 of 4 0.30Down
Larval CNS194 ± 94 of 4 0.89Down
Larval Salivary gland178 ± 84 of 4 0.81Down
Larval midgut105 ± 54 of 4 0.48Down
Larval tubule92 ± 14 of 4 0.40Down
Larval hindgut85 ± 04 of 4 0.39Down
Larval fat body152 ± 64 of 4 0.70Down
Larval trachea118 ± 204 of 4 0.54Down
Larval carcass115 ± 84 of 4 0.53Down
S2 cells (growing)259 ± 24 of 4 1.19Up
Whole fly219 ± 54 of 4

Looking for CG17678-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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