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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17681-RA through 18771 annotations produced 1 hits



(CG17681):

Annotation Number : CG17681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032668
Gbrowse : chr2L:18142528-18154410 (+) // 100.0 //
Probeset : 1633142_at
Accessions : protein= NP_724098;, nucleotide= NM_165244;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity /
FlyMine data for FBgn0032668.
VDRC has 3 RNAi stocks for FBgn0032668 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.50None
Head12 ± 00 of 4 1.50Up
Eye9 ± 32 of 4 1.23None
Thoracicoabdominal ganglion4 ± 11 of 4 0.60Down
Salivary gland10 ± 30 of 4 1.27None
Crop7 ± 10 of 4 0.90None
Midgut35 ± 34 of 4 4.30Up
Tubule46 ± 24 of 4 5.80Up
Hindgut7 ± 22 of 4 0.90None
Heart10 ± 13 of 4 1.33None
Fat body19 ± 54 of 4 2.45Up
Ovary5 ± 11 of 4 0.70None
Testis7 ± 13 of 4 0.90None
Male accessory glands15 ± 12 of 4 1.90Up
Virgin spermatheca14 ± 13 of 4 1.79Up
Mated spermatheca10 ± 22 of 4 1.35None
Adult carcass13 ± 41 of 4 1.60None
Larval CNS3 ± 10 of 4 0.47Down
Larval Salivary gland14 ± 12 of 4 1.82Up
Larval midgut43 ± 64 of 4 5.42Up
Larval tubule57 ± 64 of 4 7.00Up
Larval hindgut8 ± 04 of 4 0.99None
Larval fat body32 ± 24 of 4 4.00Up
Larval trachea5 ± 11 of 4 0.64Down
Larval carcass4 ± 10 of 4 0.49Down
S2 cells (growing)14 ± 14 of 4 1.80Up
Whole fly8 ± 03 of 4

Looking for CG17681-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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