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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17686-RA through 18771 annotations produced 1 hits



klett (DIP1):

Annotation Number : CG17686
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024807
Gbrowse : chrX:21495822-21501185 (-) // 100.0 //
Probeset : 1624215_s_at
Accessions : protein= NP_001162814; /// NP_001162815; /// NP_001162816; /// NP_001162817; /// NP_001162818; /// NP_524668; /// NP_728449; /// NP_728450; /// NP_728451;, nucleotide= NM_001169343; /// NM_001169344; /// NM_001169345; /// NM_001169346; /// NM_001169347; /// NM_079929; /// NM_167772; /// NM_167773; /// NM_167774;
Pathway : 0000785 // chromatin // non-traceable author statement /// 0005622 // intracellular // inferred from electronic annotati
Interpro : 0003682 // chromatin binding // non-traceable author statement /// 0003723 // RNA binding // inferred from electronic an
FlyMine data for FBgn0024807.
BDGP gene expression has embryonic in situ data for DIP1: 4 pix of staining in 1 body parts.
BioGrid reports that CG17686 interacts with CG9715 CG10388 .
TRiP has 2 RNAi stocks for FBgn0024807 available for purchase.
VDRC has 3 RNAi stocks for FBgn0024807 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1183 ± 114 of 4 5.50Up
Head325 ± 274 of 4 1.50Up
Eye594 ± 224 of 4 2.77Up
Thoracicoabdominal ganglion1240 ± 384 of 4 5.80Up
Salivary gland484 ± 324 of 4 2.26Up
Crop498 ± 94 of 4 2.30Up
Midgut187 ± 114 of 4 0.90None
Tubule302 ± 134 of 4 1.40Up
Hindgut330 ± 124 of 4 1.50Up
Heart252 ± 274 of 4 1.18None
Fat body234 ± 254 of 4 1.10None
Ovary334 ± 104 of 4 1.60Up
Testis227 ± 174 of 4 1.10None
Male accessory glands315 ± 264 of 4 1.50Up
Virgin spermatheca378 ± 444 of 4 1.76Up
Mated spermatheca446 ± 524 of 4 2.08Up
Adult carcass329 ± 84 of 4 1.50Up
Larval CNS1172 ± 214 of 4 5.47Up
Larval Salivary gland707 ± 294 of 4 3.30Up
Larval midgut149 ± 64 of 4 0.70Down
Larval tubule297 ± 164 of 4 1.40Up
Larval hindgut479 ± 554 of 4 2.24Up
Larval fat body324 ± 354 of 4 1.50None
Larval trachea486 ± 584 of 4 2.27Up
Larval carcass509 ± 154 of 4 2.38Up
S2 cells (growing)489 ± 94 of 4 2.28Up
Whole fly214 ± 64 of 4

Looking for CG17686-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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