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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17712-RA through 18771 annotations produced 1 hits



(CG17712):

Annotation Number : CG17712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027597
Gbrowse : chr2L:1750686-1752116 (-) // 100.0 //
Probeset : 1632626_at
Accessions : protein= NP_608619;, nucleotide= NM_134775;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0027597.
BioGrid reports that CG17712 interacts with CG17712 CG5984 .
VDRC has 3 RNAi stocks for FBgn0027597 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 34 of 4 1.70Up
Head53 ± 14 of 4 0.90None
Eye68 ± 34 of 4 1.18None
Thoracicoabdominal ganglion85 ± 14 of 4 1.50Up
Salivary gland146 ± 94 of 4 2.54Up
Crop65 ± 24 of 4 1.10None
Midgut50 ± 14 of 4 0.90None
Tubule81 ± 14 of 4 1.40Up
Hindgut74 ± 44 of 4 1.30Up
Heart36 ± 04 of 4 0.63Down
Fat body27 ± 24 of 4 0.48Down
Ovary156 ± 24 of 4 2.70Up
Testis55 ± 14 of 4 1.00None
Male accessory glands69 ± 54 of 4 1.20None
Virgin spermatheca30 ± 24 of 4 0.53Down
Mated spermatheca35 ± 24 of 4 0.62Down
Adult carcass34 ± 44 of 4 0.60Down
Larval CNS93 ± 64 of 4 1.62Up
Larval Salivary gland209 ± 124 of 4 3.63Up
Larval midgut41 ± 34 of 4 0.72Down
Larval tubule97 ± 34 of 4 1.70Up
Larval hindgut65 ± 54 of 4 1.13None
Larval fat body42 ± 34 of 4 0.70Down
Larval trachea66 ± 34 of 4 1.16None
Larval carcass55 ± 54 of 4 0.97None
S2 cells (growing)65 ± 24 of 4 1.13None
Whole fly57 ± 34 of 4

Looking for CG17712-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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