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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1772-RA through 18771 annotations produced 1 hits



decapo (dap):

Annotation Number : CG1772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010316
Gbrowse : chr2R:5599827-5603768 (+) // 100.0 //
Probeset : 1625199_s_at
Accessions : protein= NP_476948;, nucleotide= NM_057600;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004861 // cyclin-dependent protein kinase inhibitor activity // inferred from direct assay /// 0004861 // cyclin-depend
FlyMine data for FBgn0010316.
BDGP gene expression has embryonic in situ data for dap: 81 pix of staining in 22 body parts.
BioGrid reports that CG1772 interacts with CG9193 CG4194 CG11420 CG1956 CG2125 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG3938 CG6376 CG7413 CG7413 CG7413 CG7413 CG7413 CG7413 CG18497 CG1034 CG14119 CG15043 CG3018 CG5968 CG14534 CG2948 CG17508 CG5708 CG7281 CG7948 CG11525 CG5568 CG5731 CG3850 CG5390 CG31811 CG8667 CG18273 CG13625 CG2711 CG3938 CG1120 CG4394 CG6521 CG4771 CG4673 CG3193 CG5009 CG4496 CG6191 CG11486 CG13900 CG17964 CG1765 CG18476 CG3093 CG11759 CG9027 CG8181 .
TRiP has 1 RNAi stocks for FBgn0010316 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 34 of 4 0.10Down
Head95 ± 54 of 4 0.30Down
Eye104 ± 34 of 4 0.30Down
Thoracicoabdominal ganglion41 ± 24 of 4 0.10Down
Salivary gland95 ± 84 of 4 0.28Down
Crop163 ± 84 of 4 0.50Down
Midgut59 ± 14 of 4 0.20Down
Tubule47 ± 14 of 4 0.10Down
Hindgut101 ± 44 of 4 0.30Down
Heart86 ± 34 of 4 0.25Down
Fat body92 ± 144 of 4 0.26Down
Ovary1117 ± 224 of 4 3.20Up
Testis45 ± 34 of 4 0.10Down
Male accessory glands134 ± 84 of 4 0.40Down
Virgin spermatheca143 ± 74 of 4 0.41Down
Mated spermatheca146 ± 14 of 4 0.42Down
Adult carcass93 ± 94 of 4 0.30Down
Larval CNS570 ± 514 of 4 1.64Up
Larval Salivary gland69 ± 14 of 4 0.20Down
Larval midgut50 ± 84 of 4 0.15Down
Larval tubule84 ± 24 of 4 0.20Down
Larval hindgut103 ± 34 of 4 0.30Down
Larval fat body155 ± 84 of 4 0.40Down
Larval trachea221 ± 254 of 4 0.64Down
Larval carcass115 ± 34 of 4 0.33Down
S2 cells (growing)187 ± 54 of 4 0.54Down
Whole fly347 ± 304 of 4

Looking for CG1772-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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