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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17732-RA through 18771 annotations produced 1 hits



(CG17732):

Annotation Number : CG17732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036923
Gbrowse : chr3L:19974784-19977291 (+) // 100.0 //
Probeset : 1641107_at
Accessions : protein= NP_649164;, nucleotide= NM_140907;
FlyMine data for FBgn0036923.
VDRC has 3 RNAi stocks for FBgn0036923 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.70None
Head6 11 of 4 1.00None
Eye4 10 of 4 0.59None
Thoracicoabdominal ganglion5 10 of 4 0.90None
Salivary gland16 40 of 4 2.35None
Crop6 10 of 4 1.00None
Midgut12 11 of 4 1.90Up
Tubule4 00 of 4 0.60Down
Hindgut7 20 of 4 1.10None
Heart2 00 of 4 0.35None
Fat body10 71 of 4 1.54None
Ovary7 03 of 4 1.10None
Testis12 04 of 4 1.80None
Male accessory glands9 40 of 4 1.30None
Virgin spermatheca3 00 of 4 0.45None
Mated spermatheca7 20 of 4 1.07None
Adult carcass5 21 of 4 0.70None
Larval CNS6 21 of 4 1.00None
Larval Salivary gland10 30 of 4 1.56None
Larval midgut11 11 of 4 1.63None
Larval tubule7 10 of 4 1.00None
Larval hindgut2 00 of 4 0.37None
Larval fat body14 32 of 4 2.10None
Larval trachea3 20 of 4 0.46None
Larval carcass6 20 of 4 0.93None
S2 cells (growing)5 10 of 4 0.77None
Whole fly6 11 of 4

Looking for CG17732-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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