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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17734-RA through 18771 annotations produced 1 hits



(CG17734):

Annotation Number : CG17734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037890
Gbrowse : chr3R:7067921-7069698 (-) // 100.0 //
Probeset : 1624488_a_at
Accessions : protein= NP_650063; /// NP_731561;, nucleotide= NM_141806; /// NM_169383;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0037890.
VDRC has 3 RNAi stocks for FBgn0037890 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain923 ± 214 of 4 0.90None
Head870 ± 584 of 4 0.90None
Eye727 ± 234 of 4 0.73Down
Thoracicoabdominal ganglion1234 ± 424 of 4 1.20Up
Salivary gland1509 ± 534 of 4 1.51Up
Crop1482 ± 864 of 4 1.50Up
Midgut1298 ± 534 of 4 1.30Up
Tubule1799 ± 504 of 4 1.80Up
Hindgut1642 ± 604 of 4 1.60Up
Heart1365 ± 604 of 4 1.36Up
Fat body1668 ± 2284 of 4 1.67Up
Ovary1205 ± 234 of 4 1.20Up
Testis215 ± 94 of 4 0.20Down
Male accessory glands584 ± 564 of 4 0.60Down
Virgin spermatheca1775 ± 1114 of 4 1.77Up
Mated spermatheca1766 ± 1164 of 4 1.76Up
Adult carcass1467 ± 724 of 4 1.50Up
Larval CNS824 ± 974 of 4 0.82Down
Larval Salivary gland1163 ± 394 of 4 1.16Up
Larval midgut2465 ± 2254 of 4 2.46Up
Larval tubule955 ± 514 of 4 1.00None
Larval hindgut1906 ± 1034 of 4 1.90Up
Larval fat body488 ± 544 of 4 0.50Down
Larval trachea774 ± 844 of 4 0.77Down
Larval carcass1555 ± 2304 of 4 1.55None
S2 cells (growing)518 ± 84 of 4 0.52Down
Whole fly1001 ± 244 of 4

Looking for CG17734-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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