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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17738-RA through 18771 annotations produced 1 hits



(CG17738):

Annotation Number : CG17738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038009
Gbrowse : chr3R:8096641-8096974 (+) // 100.0 //
Probeset : 1634594_at
Accessions : protein= NP_650172;, nucleotide= NM_141915;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038009.
BioGrid reports that CG17738 interacts with CG4008 .
VDRC has 2 RNAi stocks for FBgn0038009 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head27 ± 34 of 4 1.30None
Eye6 ± 10 of 4 0.30Down
Thoracicoabdominal ganglion8 ± 10 of 4 0.40Down
Salivary gland3 ± 20 of 4 0.19Down
Crop1055 ± 354 of 451.30Up
Midgut15 ± 13 of 4 0.70None
Tubule1 ± 00 of 4 0.10Down
Hindgut10 ± 11 of 4 0.50Down
Heart4 ± 10 of 4 0.24Down
Fat body5 ± 10 of 4 0.26Down
Ovary2 ± 00 of 4 0.10Down
Testis4 ± 11 of 4 0.20Down
Male accessory glands6 ± 20 of 4 0.30Down
Virgin spermatheca2 ± 10 of 4 0.12Down
Mated spermatheca2 ± 10 of 4 0.12Down
Adult carcass15 ± 30 of 4 0.70None
Larval CNS2 ± 11 of 4 0.14Down
Larval Salivary gland3 ± 00 of 4 0.17Down
Larval midgut11 ± 10 of 4 0.54Down
Larval tubule19 ± 04 of 4 0.90None
Larval hindgut1206 ± 1714 of 458.61Up
Larval fat body103 ± 154 of 4 5.00Up
Larval trachea595 ± 2724 of 428.93Up
Larval carcass3184 ± 1704 of 4154.80Up
S2 cells (growing)2 ± 00 of 4 0.11Down
Whole fly20 ± 14 of 4

Looking for CG17738-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime