Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17743-RA through 18771 annotations produced 1 hits



Pleiohomeotic (pho):

Annotation Number : CG17743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002521
Gbrowse : chr4:1193093-1202271 (-) // 100.0 //
Probeset : 1626947_s_at
Accessions : protein= NP_524630; /// NP_726651;, nucleotide= NM_079891; /// NM_166827;
Pathway : 0000790 // nuclear chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic anno
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direc
FlyMine data for FBgn0002521.
BDGP gene expression has embryonic in situ data for pho: 15 pix of staining in 2 body parts.
Homophila reports that CG17743 is a close match (8e-11) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
BioGrid reports that CG17743 interacts with CG3771 CG6502 CG9786 CG4637 CG12058 CG5637 CG5637 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 .
TRiP has 2 RNAi stocks for FBgn0002521 available for purchase.
VDRC has 2 RNAi stocks for FBgn0002521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain716 ± 74 of 4 1.60Up
Head359 ± 184 of 4 0.80None
Eye332 ± 154 of 4 0.76Down
Thoracicoabdominal ganglion722 ± 154 of 4 1.70Up
Salivary gland342 ± 194 of 4 0.79Down
Crop360 ± 94 of 4 0.80None
Midgut235 ± 54 of 4 0.50Down
Tubule293 ± 114 of 4 0.70Down
Hindgut216 ± 94 of 4 0.50Down
Heart166 ± 104 of 4 0.38Down
Fat body232 ± 174 of 4 0.53Down
Ovary892 ± 94 of 4 2.10Up
Testis299 ± 144 of 4 0.70Down
Male accessory glands314 ± 114 of 4 0.70Down
Virgin spermatheca281 ± 244 of 4 0.65Down
Mated spermatheca350 ± 154 of 4 0.81Down
Adult carcass245 ± 54 of 4 0.60Down
Larval CNS966 ± 314 of 4 2.22Up
Larval Salivary gland377 ± 144 of 4 0.87None
Larval midgut360 ± 114 of 4 0.83None
Larval tubule449 ± 94 of 4 1.00None
Larval hindgut367 ± 124 of 4 0.84None
Larval fat body378 ± 34 of 4 0.90None
Larval trachea354 ± 174 of 4 0.81Down
Larval carcass525 ± 104 of 4 1.21Up
S2 cells (growing)502 ± 54 of 4 1.15None
Whole fly435 ± 254 of 4

Looking for CG17743-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime