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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1775-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:27436769-27441478 (+) // 100.0 //):

Annotation Number : CG1775
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr3-130.2
Gbrowse :
Probeset : 1637202_a_at
Accessions : protein= , nucleotide=
Interpro : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for chr3-130.2.
Homophila reports that CG1775 is a close match (7e-17) to human gene SMAD7;MADH7;CRCS3 (NP_005895), a gene associated with {Colorectal cancer, susceptiblity to, 3}, 612229 (3).
BioGrid reports that CG1775 interacts with CG32264 CG3780 CG5703 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG1891 CG9224 CG14026 CG14026 CG14026 CG4943 CG1046 CG12399 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 20 of 4 1.50None
Head15 ± 30 of 4 2.20None
Eye14 ± 40 of 4 2.08None
Thoracicoabdominal ganglion12 ± 20 of 4 1.80None
Salivary gland25 ± 31 of 4 3.69Up
Crop14 ± 41 of 4 2.10None
Midgut20 ± 30 of 4 2.90Up
Tubule12 ± 20 of 4 1.80Up
Hindgut18 ± 21 of 4 2.70Up
Heart10 ± 22 of 4 1.58None
Fat body22 ± 61 of 4 3.22Up
Ovary9 ± 10 of 4 1.40None
Testis15 ± 10 of 4 2.20Up
Male accessory glands21 ± 30 of 4 3.10Up
Virgin spermatheca19 ± 23 of 4 2.75Up
Mated spermatheca23 ± 32 of 4 3.38Up
Adult carcass30 ± 22 of 4 4.40Up
Larval CNS9 ± 51 of 4 1.34None
Larval Salivary gland14 ± 50 of 4 2.10None
Larval midgut11 ± 20 of 4 1.69None
Larval tubule12 ± 21 of 4 1.70None
Larval hindgut13 ± 11 of 4 2.00Up
Larval fat body21 ± 12 of 4 3.10Up
Larval trachea8 ± 81 of 4 1.28None
Larval carcass9 ± 30 of 4 1.44None
S2 cells (growing)4 ± 20 of 4 0.60None
Whole fly6 ± 10 of 4

Looking for CG1775-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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