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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17751-RA through 18771 annotations produced 1 hits



(CG17751):

Annotation Number : CG17751
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038717
Gbrowse : chr3R:15433361-15434804 (+) // 100.0 //
Probeset : 1630528_at
Accessions : protein= NP_650816;, nucleotide= NM_142559;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0038717.
Homophila reports that CG17751 is a close match (7e-13) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 3 RNAi stocks for FBgn0038717 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10None
Head4 ± 00 of 4 0.10None
Eye3 ± 10 of 4 0.11None
Thoracicoabdominal ganglion1 ± 00 of 4 0.10None
Salivary gland9 ± 20 of 4 0.31None
Crop3 ± 00 of 4 0.10None
Midgut3 ± 10 of 4 0.10None
Tubule1859 ± 4144 of 458.30Up
Hindgut3 ± 10 of 4 0.10None
Heart5 ± 12 of 4 0.16None
Fat body30 ± 461 of 4 0.95None
Ovary2 ± 00 of 4 0.10None
Testis1 ± 00 of 4 0.10None
Male accessory glands6 ± 20 of 4 0.20None
Virgin spermatheca2 ± 00 of 4 0.08None
Mated spermatheca3 ± 10 of 4 0.12None
Adult carcass9 ± 20 of 4 0.30None
Larval CNS1 ± 10 of 4 0.05None
Larval Salivary gland2 ± 00 of 4 0.09None
Larval midgut4 ± 10 of 4 0.14None
Larval tubule2465 ± 1734 of 477.30Up
Larval hindgut3 ± 10 of 4 0.10None
Larval fat body7 ± 10 of 4 0.20None
Larval trachea2 ± 10 of 4 0.08None
Larval carcass1 ± 00 of 4 0.06None
S2 cells (growing)4 ± 10 of 4 0.15None
Whole fly31 ± 114 of 4

Looking for CG17751-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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