FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17754-RC through 18771 annotations produced 2 hits

(CG17754):

Annotation Number : CG17754
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030114
Gbrowse : chrX:9144459-9149853 (+) // 100.0 //
Probeset : 1628712_at
Accessions : protein= NP_572549; /// NP_727331; /// NP_788894;, nucleotide= NM_132321; /// NM_167187; /// NM_176721;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0030114.
BDGP gene expression has embryonic in situ data for CG17754: 36 pix of staining in 4 body parts.
Homophila reports that CG17754 is a close match (2e-49) to human gene GAN;GAN1 (NP_071324), a gene associated with Giant axonal neuropathy-1, 256850 (3).
BioGrid reports that CG17754 interacts with CG5731 .
TRiP has 1 RNAi stocks for FBgn0030114 available for purchase.
VDRC has 5 RNAi stocks for FBgn0030114 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	125 ± 5	4 of 4	2.20	Up
Head	72 ± 5	4 of 4	1.30	None
Eye	102 ± 7	4 of 4	1.79	Up
Thoracicoabdominal ganglion	157 ± 9	4 of 4	2.70	Up
Salivary gland	183 ± 17	4 of 4	3.19	Up
Crop	142 ± 5	4 of 4	2.50	Up
Midgut	91 ± 3	4 of 4	1.60	Up
Tubule	145 ± 12	4 of 4	2.50	Up
Hindgut	110 ± 4	4 of 4	1.90	Up
Heart	132 ± 13	4 of 4	2.31	Up
Fat body	109 ± 10	4 of 4	1.92	Up
Ovary	50 ± 4	4 of 4	0.90	None
Testis	108 ± 7	4 of 4	1.90	Up
Male accessory glands	157 ± 10	4 of 4	2.70	Up
Virgin spermatheca	145 ± 9	4 of 4	2.54	Up
Mated spermatheca	175 ± 7	4 of 4	3.06	Up
Adult carcass	89 ± 8	2 of 4	1.60	Up
Larval CNS	148 ± 24	4 of 4	2.59	Up
Larval Salivary gland	97 ± 5	4 of 4	1.70	Up
Larval midgut	681 ± 88	4 of 4	11.87	Up
Larval tubule	645 ± 30	4 of 4	11.20	Up
Larval hindgut	368 ± 49	4 of 4	6.42	Up
Larval fat body	176 ± 17	4 of 4	3.10	Up
Larval trachea	147 ± 24	4 of 4	2.58	Up
Larval carcass	269 ± 57	4 of 4	4.70	Up
S2 cells (growing)	121 ± 8	4 of 4	2.12	Up
Whole fly	57 ± 3	4 of 4

(CG17754):

Annotation Number : CG17754
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030114
Gbrowse : chrX:9144459-9149853 (+) // 100.0 //
Probeset : 1638327_a_at
Accessions : protein= NP_572549; /// NP_727331; /// NP_788894;, nucleotide= NM_132321; /// NM_167187; /// NM_176721;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0030114.
BDGP gene expression has embryonic in situ data for CG17754: 36 pix of staining in 4 body parts.
Homophila reports that CG17754 is a close match (2e-49) to human gene GAN;GAN1 (NP_071324), a gene associated with Giant axonal neuropathy-1, 256850 (3).
BioGrid reports that CG17754 interacts with CG5731 .
TRiP has 1 RNAi stocks for FBgn0030114 available for purchase.
VDRC has 5 RNAi stocks for FBgn0030114 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	34 ± 2	4 of 4	1.70	Up
Head	15 ± 1	3 of 4	0.70	None
Eye	10 ± 3	1 of 4	0.50	None
Thoracicoabdominal ganglion	26 ± 3	4 of 4	1.30	None
Salivary gland	36 ± 4	1 of 4	1.79	Up
Crop	42 ± 1	4 of 4	2.00	Up
Midgut	22 ± 0	0 of 4	1.10	None
Tubule	28 ± 2	3 of 4	1.40	Up
Hindgut	36 ± 2	4 of 4	1.70	Up
Heart	35 ± 2	4 of 4	1.74	Up
Fat body	21 ± 3	1 of 4	1.02	None
Ovary	31 ± 1	4 of 4	1.60	None
Testis	58 ± 3	4 of 4	2.80	Up
Male accessory glands	29 ± 3	1 of 4	1.40	None
Virgin spermatheca	3 ± 1	0 of 4	0.16	Down
Mated spermatheca	6 ± 1	0 of 4	0.33	Down
Adult carcass	32 ± 3	3 of 4	1.60	None
Larval CNS	24 ± 1	4 of 4	1.21	None
Larval Salivary gland	30 ± 2	2 of 4	1.47	None
Larval midgut	145 ± 15	4 of 4	7.05	Up
Larval tubule	181 ± 8	4 of 4	8.80	Up
Larval hindgut	71 ± 8	4 of 4	3.46	Up
Larval fat body	59 ± 4	4 of 4	2.90	Up
Larval trachea	20 ± 2	4 of 4	1.01	None
Larval carcass	67 ± 19	3 of 4	3.30	None
S2 cells (growing)	43 ± 1	4 of 4	2.13	Up
Whole fly	20 ± 4	3 of 4

Looking for CG17754-RC. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720