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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1776-RA through 18771 annotations produced 1 hits



MLCK-like (CG42347):

Annotation Number : CG1776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259678
Gbrowse : chr2R:5606143-5632778 (-) // 100.0 //
Probeset : 1633881_at
Accessions : protein= NP_610514; /// NP_724821;, nucleotide= NM_136670; /// NM_165693; /// NM_165693;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0259678.
Homophila reports that CG1776 is a close match (3e-11) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
TRiP has 1 RNAi stocks for FBgn0259678 available for purchase.
VDRC has 5 RNAi stocks for FBgn0259678 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 11 of 4 0.10Down
Head31 ± 34 of 4 0.40Down
Eye41 ± 24 of 4 0.49Down
Thoracicoabdominal ganglion18 ± 24 of 4 0.20Down
Salivary gland31 ± 13 of 4 0.37Down
Crop104 ± 54 of 4 1.20Up
Midgut597 ± 94 of 4 7.00Up
Tubule44 ± 74 of 4 0.50Down
Hindgut178 ± 54 of 4 2.10Up
Heart66 ± 44 of 4 0.79Down
Fat body17 ± 71 of 4 0.20Down
Ovary4 ± 00 of 4 0.10Down
Testis5 ± 11 of 4 0.10Down
Male accessory glands23 ± 34 of 4 0.30Down
Virgin spermatheca24 ± 22 of 4 0.29Down
Mated spermatheca26 ± 44 of 4 0.31Down
Adult carcass237 ± 94 of 4 2.80Up
Larval CNS8 ± 32 of 4 0.10Down
Larval Salivary gland16 ± 31 of 4 0.20Down
Larval midgut316 ± 164 of 4 3.72Up
Larval tubule96 ± 44 of 4 1.10None
Larval hindgut146 ± 124 of 4 1.73Up
Larval fat body5 ± 20 of 4 0.10Down
Larval trachea6 ± 40 of 4 0.08Down
Larval carcass256 ± 414 of 4 3.03Up
S2 cells (growing)5 ± 10 of 4 0.06Down
Whole fly84 ± 54 of 4

Looking for CG1776-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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