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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17762-RB through 18771 annotations produced 1 hits



tomosyn (tomosyn):

Annotation Number : CG17762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030412
Gbrowse : chrX:12525652-12547377 (+) // 100.0 //
Probeset : 1635638_s_at
Accessions : protein= NP_001162735; /// NP_001162736; /// NP_572819; /// NP_727628; /// NP_727629; /// NP_727630;, nucleotide= NM_001169264; /// NM_001169265; /// NM_132591; /// NM_167328; /// NM_167329; /// NM_167330;
Pathway : 0008021 // synaptic vesicle // non-traceable author statement /// 0016021 // integral to membrane // inferred from elect
Interpro : 0017075 // syntaxin-1 binding // inferred from sequence or structural similarity
FlyMine data for FBgn0030412.
BDGP gene expression has embryonic in situ data for tomosyn: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0030412 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030412 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1683 ± 354 of 411.50Up
Head324 ± 64 of 4 2.20Up
Eye428 ± 274 of 4 2.93Up
Thoracicoabdominal ganglion1393 ± 124 of 4 9.50Up
Salivary gland200 ± 114 of 4 1.37Up
Crop140 ± 84 of 4 1.00None
Midgut133 ± 04 of 4 0.90None
Tubule161 ± 144 of 4 1.10None
Hindgut140 ± 94 of 4 1.00None
Heart148 ± 54 of 4 1.02None
Fat body153 ± 124 of 4 1.05None
Ovary248 ± 94 of 4 1.70Up
Testis32 ± 34 of 4 0.20Down
Male accessory glands735 ± 94 of 4 5.00Up
Virgin spermatheca173 ± 34 of 4 1.19None
Mated spermatheca227 ± 114 of 4 1.56Up
Adult carcass109 ± 74 of 4 0.70Down
Larval CNS358 ± 274 of 4 2.46Up
Larval Salivary gland190 ± 44 of 4 1.31Up
Larval midgut143 ± 144 of 4 0.98None
Larval tubule283 ± 184 of 4 1.90Up
Larval hindgut168 ± 94 of 4 1.15None
Larval fat body233 ± 144 of 4 1.60Up
Larval trachea304 ± 224 of 4 2.09Up
Larval carcass221 ± 154 of 4 1.52Up
S2 cells (growing)184 ± 54 of 4 1.26Up
Whole fly145 ± 104 of 4

Looking for CG17762-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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