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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17765-RA through 18771 annotations produced 1 hits



(CG17765):

Annotation Number : CG17765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033529
Gbrowse : chr2R:6367664-6369398 (+) // 100.0 //
Probeset : 1622941_at
Accessions : protein= NP_610592;, nucleotide= NM_136748;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0033529.
BDGP gene expression has embryonic in situ data for CG17765: 32 pix of staining in 16 body parts.
Homophila reports that CG17765 is a close match (2e-13) to human gene CANP3;CAPN3 (NP_997630), a gene associated with Muscular dystrophy, limb-girdle, type 2A, 253600 (3).
BioGrid reports that CG17765 interacts with CG17765 CG30147 .
VDRC has 2 RNAi stocks for FBgn0033529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain713 ± 124 of 4 1.90Up
Head560 ± 244 of 4 1.50Up
Eye996 ± 224 of 4 2.66Up
Thoracicoabdominal ganglion684 ± 294 of 4 1.80Up
Salivary gland971 ± 234 of 4 2.59Up
Crop897 ± 234 of 4 2.40Up
Midgut490 ± 174 of 4 1.30Up
Tubule746 ± 194 of 4 2.00Up
Hindgut979 ± 194 of 4 2.60Up
Heart497 ± 184 of 4 1.33Up
Fat body304 ± 234 of 4 0.81None
Ovary452 ± 64 of 4 1.20None
Testis421 ± 64 of 4 1.10None
Male accessory glands816 ± 274 of 4 2.20Up
Virgin spermatheca296 ± 44 of 4 0.79None
Mated spermatheca316 ± 144 of 4 0.84None
Adult carcass397 ± 64 of 4 1.10None
Larval CNS956 ± 954 of 4 2.55Up
Larval Salivary gland785 ± 364 of 4 2.09Up
Larval midgut537 ± 124 of 4 1.43Up
Larval tubule829 ± 194 of 4 2.20Up
Larval hindgut920 ± 424 of 4 2.45Up
Larval fat body408 ± 114 of 4 1.10None
Larval trachea923 ± 374 of 4 2.46Up
Larval carcass543 ± 234 of 4 1.45Up
S2 cells (growing)1309 ± 114 of 4 3.49Up
Whole fly375 ± 364 of 4

Looking for CG17765-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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