Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17766-RA through 18771 annotations produced 1 hits



Rabconnectin-3beta (Rbcn-3B):

Annotation Number : CG17766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023510
Gbrowse : chrX:1802956-1810054 (+) // 100.0 //
Probeset : 1636006_at
Accessions : protein= NP_569960;, nucleotide= NM_130604;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from sequence or structural similarity
Interpro : 0003924 // GTPase activity // inferred from sequence or structural similarity
FlyMine data for FBgn0023510.
VDRC has 3 RNAi stocks for FBgn0023510 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain292 ± 174 of 4 2.30Up
Head131 ± 94 of 4 1.00None
Eye208 ± 174 of 4 1.63Up
Thoracicoabdominal ganglion328 ± 184 of 4 2.60Up
Salivary gland1026 ± 1084 of 4 8.03Up
Crop210 ± 84 of 4 1.60Up
Midgut326 ± 154 of 4 2.60Up
Tubule324 ± 134 of 4 2.50Up
Hindgut255 ± 84 of 4 2.00Up
Heart158 ± 114 of 4 1.24None
Fat body144 ± 164 of 4 1.13None
Ovary205 ± 34 of 4 1.60Up
Testis48 ± 24 of 4 0.40Down
Male accessory glands141 ± 74 of 4 1.10None
Virgin spermatheca131 ± 124 of 4 1.02None
Mated spermatheca124 ± 114 of 4 0.97None
Adult carcass120 ± 204 of 4 0.90None
Larval CNS189 ± 304 of 4 1.48Up
Larval Salivary gland221 ± 444 of 4 1.73None
Larval midgut349 ± 304 of 4 2.73Up
Larval tubule197 ± 124 of 4 1.50Up
Larval hindgut281 ± 164 of 4 2.20Up
Larval fat body95 ± 34 of 4 0.70Down
Larval trachea215 ± 274 of 4 1.69Up
Larval carcass158 ± 64 of 4 1.24Up
S2 cells (growing)163 ± 44 of 4 1.28Up
Whole fly127 ± 84 of 4

Looking for CG17766-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime