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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17781-RA through 18771 annotations produced 1 hits



/// (CG17780 /// CG17781):

Annotation Number : CG17781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039196 /// FBgn0039197
Gbrowse : chr3R:20199212-20200632 (-) // 100.0 //
Probeset : 1629761_at
Accessions : protein= NP_001097902; /// NP_001097903; /// NP_651258; /// NP_651259; /// NP_732995;, nucleotide= NM_001104432; /// NM_001104433; /// NM_143001; /// NM_143002; /// NM_170143;
FlyMine data for FBgn0039196 /// FBgn0039197.
BioGrid reports that CG17781 interacts with CG7285 Dmel CG14425 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.80None
Head3 ± 10 of 4 1.00None
Eye0 ± 00 of 4 0.12None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland2 ± 00 of 4 0.58None
Crop3 ± 10 of 4 1.00None
Midgut1 ± 10 of 4 0.50None
Tubule0 ± 00 of 4 0.20Down
Hindgut167 ± 44 of 448.30Up
Heart0 ± 00 of 4 0.15None
Fat body2 ± 10 of 4 0.60None
Ovary1 ± 00 of 4 0.40None
Testis2 ± 10 of 4 0.80None
Male accessory glands1 ± 00 of 4 0.50None
Virgin spermatheca1 ± 10 of 4 0.55None
Mated spermatheca0 ± 00 of 4 0.21None
Adult carcass2 ± 00 of 4 0.80None
Larval CNS0 ± 00 of 4 0.26None
Larval Salivary gland1 ± 00 of 4 0.27None
Larval midgut1 ± 00 of 4 0.41None
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut56 ± 114 of 416.13Up
Larval fat body1 ± 00 of 4 0.30None
Larval trachea0 ± 00 of 4 0.20None
Larval carcass0 ± 00 of 4 0.20None
S2 cells (growing)0 ± 00 of 4 0.17None
Whole fly3 ± 10 of 4

Looking for CG17781-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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