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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17782-RA through 18771 annotations produced 1 hits



(CG17782):

Annotation Number : CG17782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039195
Gbrowse : chr3R:20196490-20198458 (-) // 100.0 //
Probeset : 1624671_at
Accessions : protein= NP_651257;, nucleotide= NM_143000;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039195.
VDRC has 3 RNAi stocks for FBgn0039195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.90None
Head7 ± 20 of 4 3.00None
Eye7 ± 11 of 4 3.12Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.90None
Salivary gland10 ± 30 of 4 4.52None
Crop3 ± 10 of 4 1.60None
Midgut2 ± 00 of 4 1.10None
Tubule3 ± 00 of 4 1.40Up
Hindgut3 ± 10 of 4 1.50None
Heart1 ± 00 of 4 0.84None
Fat body4 ± 30 of 4 1.96None
Ovary1 ± 00 of 4 0.50None
Testis1 ± 00 of 4 0.50None
Male accessory glands8 ± 21 of 4 3.50None
Virgin spermatheca3 ± 10 of 4 1.38None
Mated spermatheca5 ± 10 of 4 2.15None
Adult carcass6 ± 10 of 4 2.70None
Larval CNS1 ± 10 of 4 0.59None
Larval Salivary gland4 ± 10 of 4 1.90None
Larval midgut1 ± 00 of 4 0.59None
Larval tubule5 ± 00 of 4 2.50Up
Larval hindgut3 ± 10 of 4 1.47None
Larval fat body7 ± 10 of 4 3.20Up
Larval trachea1 ± 10 of 4 0.77None
Larval carcass3 ± 10 of 4 1.69None
S2 cells (growing)1 ± 00 of 4 0.63None
Whole fly2 ± 00 of 4

Looking for CG17782-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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