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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17786-RA through 18771 annotations produced 1 hits



(CG17786):

Annotation Number : CG17786
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039167
Gbrowse : chr3R:20040344-20044438 (-) // 100.0 //
Probeset : 1625262_at
Accessions : protein= NP_651231;, nucleotide= NM_142974;
FlyMine data for FBgn0039167.
BDGP gene expression has embryonic in situ data for CG17786: 28 pix of staining in 18 body parts.
VDRC has 3 RNAi stocks for FBgn0039167 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 24 of 4 5.60Up
Head10 ± 14 of 4 0.90None
Eye17 ± 34 of 4 1.42None
Thoracicoabdominal ganglion39 ± 24 of 4 3.30Up
Salivary gland37 ± 34 of 4 3.12Up
Crop34 ± 34 of 4 2.90Up
Midgut28 ± 14 of 4 2.30Up
Tubule22 ± 14 of 4 1.90Up
Hindgut40 ± 24 of 4 3.40Up
Heart14 ± 14 of 4 1.20None
Fat body20 ± 24 of 4 1.72Up
Ovary16 ± 14 of 4 1.40None
Testis6 ± 04 of 4 0.50None
Male accessory glands14 ± 13 of 4 1.20None
Virgin spermatheca25 ± 14 of 4 2.16Up
Mated spermatheca26 ± 44 of 4 2.22Up
Adult carcass21 ± 13 of 4 1.70Up
Larval CNS60 ± 14 of 4 5.07Up
Larval Salivary gland38 ± 34 of 4 3.25Up
Larval midgut13 ± 23 of 4 1.08None
Larval tubule31 ± 24 of 4 2.60Up
Larval hindgut19 ± 24 of 4 1.63None
Larval fat body28 ± 34 of 4 2.40Up
Larval trachea34 ± 54 of 4 2.84Up
Larval carcass28 ± 34 of 4 2.39Up
S2 cells (growing)28 ± 14 of 4 2.41Up
Whole fly12 ± 23 of 4

Looking for CG17786-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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