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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17788-RA through 18771 annotations produced 1 hits



CG15926 (CG42258):

Annotation Number : CG17788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259143
Gbrowse : chrX:12358131-12359525 (+) // 100.0 //
Probeset : 1632823_at
Accessions : protein= NP_572801; /// NP_572802;, nucleotide= NM_132573; /// NM_132574; /// NM_132574;
Pathway : 0005886 // plasma membrane // inferred from direct assay
FlyMine data for FBgn0259143.
VDRC has 2 RNAi stocks for FBgn0259143 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.80None
Head5 10 of 4 0.90None
Eye1 00 of 4 0.27None
Thoracicoabdominal ganglion6 00 of 4 1.10None
Salivary gland4 10 of 4 0.66None
Crop9 32 of 4 1.60None
Midgut1 00 of 4 0.30None
Tubule2 00 of 4 0.50Down
Hindgut13 13 of 4 2.20Up
Heart5 00 of 4 0.94None
Fat body5 30 of 4 0.84None
Ovary10 04 of 4 1.70None
Testis1 00 of 4 0.20None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca2 00 of 4 0.38None
Mated spermatheca1 00 of 4 0.18None
Adult carcass4 10 of 4 0.70None
Larval CNS5 21 of 4 0.87None
Larval Salivary gland5 20 of 4 0.94None
Larval midgut11 20 of 4 1.83None
Larval tubule4 20 of 4 0.70None
Larval hindgut4 10 of 4 0.70None
Larval fat body2 00 of 4 0.40None
Larval trachea7 40 of 4 1.25None
Larval carcass8 20 of 4 1.45None
S2 cells (growing)4 00 of 4 0.76None
Whole fly6 11 of 4

Looking for CG17788-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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