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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17799-RA through 18771 annotations produced 1 hits



Lectin29Ca (lectin-29Ca):

Annotation Number : CG17799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040098
Gbrowse : chr2L:8393559-8394270 (-) // 100.0 //
Probeset : 1636147_at
Accessions : protein= NP_652640;, nucleotide= NM_144383;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005534 // galactose binding // inferred from sequence or
FlyMine data for FBgn0040098.
VDRC has 1 RNAi stocks for FBgn0040098 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye2 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland4 10 of 4 0.02Down
Crop2 10 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body2 20 of 4 0.01Down
Ovary1 00 of 4 0.00Down
Testis16 82 of 4 0.10Down
Male accessory glands9177 1704 of 441.10Up
Virgin spermatheca0 00 of 4 0.00Down
Mated spermatheca2 10 of 4 0.01Down
Adult carcass15 50 of 4 0.10Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut0 00 of 4 0.00Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body0 00 of 4 0.00Down
Larval trachea2 10 of 4 0.01Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly223 334 of 4

Looking for CG17799-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime