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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1780-RA through 18771 annotations produced 1 hits



Imaginal disc growth factor 4 (Idgf4):

Annotation Number : CG1780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026415
Gbrowse : chrX:9822298-9825012 (-) // 99.55 //
Probeset : 1635389_s_at
Accessions : protein= NP_511101; /// NP_727374;, nucleotide= NM_078546; /// NM_167207;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0026415.
BDGP gene expression has embryonic in situ data for Idgf4: 26 pix of staining in 19 body parts.
Homophila reports that CG1780 is a close match (1e-31) to human gene ASRT7;CHI3L1;GP39;YKL40 (NP_001267), a gene associated with {Asthma-related traits, susceptibility to, 7}, 611960 (3);{Schizophrenia, susceptiblity to}, 181500 (3).
BioGrid reports that CG1780 interacts with CG2096 CG3891 CG8219 .
TRiP has 1 RNAi stocks for FBgn0026415 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain587 ± 304 of 4 0.60Down
Head2461 ± 344 of 4 2.40Up
Eye1890 ± 1204 of 4 1.84Up
Thoracicoabdominal ganglion1248 ± 384 of 4 1.20Up
Salivary gland526 ± 294 of 4 0.51Down
Crop1056 ± 304 of 4 1.00None
Midgut312 ± 104 of 4 0.30Down
Tubule104 ± 154 of 4 0.10Down
Hindgut3893 ± 1124 of 4 3.80Up
Heart1752 ± 644 of 4 1.71Up
Fat body2617 ± 2364 of 4 2.55Up
Ovary453 ± 34 of 4 0.40Down
Testis346 ± 134 of 4 0.30Down
Male accessory glands111 ± 224 of 4 0.10Down
Virgin spermatheca2617 ± 1114 of 4 2.55Up
Mated spermatheca2499 ± 484 of 4 2.44Up
Adult carcass2377 ± 264 of 4 2.30Up
Larval CNS924 ± 824 of 4 0.90None
Larval Salivary gland228 ± 54 of 4 0.22Down
Larval midgut272 ± 104 of 4 0.27Down
Larval tubule44 ± 64 of 4 0.00Down
Larval hindgut3191 ± 654 of 4 3.11Up
Larval fat body2654 ± 3444 of 4 2.60Up
Larval trachea4814 ± 3334 of 4 4.69Up
Larval carcass1185 ± 494 of 4 1.16Up
S2 cells (growing)76 ± 74 of 4 0.07Down
Whole fly1025 ± 324 of 4

Looking for CG1780-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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