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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17803-RA through 18771 annotations produced 1 hits



(CG17803):

Annotation Number : CG17803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038547
Gbrowse : chr3R:13624721-13626245 (-) // 100.0 //
Probeset : 1640696_at
Accessions : protein= NP_650657;, nucleotide= NM_142400;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038547.
Homophila reports that CG17803 is a close match (4e-11) to human gene HTX;HTX1;ZIC3 (NP_003404), a gene associated with Heterotaxy, X-linked visceral, 306955 (3).
TRiP has 1 RNAi stocks for FBgn0038547 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038547 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 34 of 4 8.80Up
Head8 00 of 4 1.50Up
Eye7 10 of 4 1.27None
Thoracicoabdominal ganglion34 14 of 4 6.10Up
Salivary gland15 30 of 4 2.60Up
Crop6 20 of 4 1.00None
Midgut3 10 of 4 0.60None
Tubule8 00 of 4 1.40Up
Hindgut8 10 of 4 1.50None
Heart2 00 of 4 0.37Down
Fat body6 30 of 4 1.10None
Ovary11 04 of 4 2.00Up
Testis1 00 of 4 0.30Down
Male accessory glands8 10 of 4 1.50None
Virgin spermatheca6 00 of 4 1.10None
Mated spermatheca2 10 of 4 0.35Down
Adult carcass6 10 of 4 1.10None
Larval CNS193 234 of 433.62Up
Larval Salivary gland3 10 of 4 0.58None
Larval midgut1 10 of 4 0.33Down
Larval tubule3 10 of 4 0.50None
Larval hindgut6 10 of 4 1.19None
Larval fat body7 20 of 4 1.20None
Larval trachea11 24 of 4 2.02Up
Larval carcass4 10 of 4 0.83None
S2 cells (growing)5 00 of 4 1.02None
Whole fly5 01 of 4

Looking for CG17803-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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