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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17806-RA through 18771 annotations produced 1 hits



(CG17806):

Annotation Number : CG17806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038548
Gbrowse : chr3R:13627261-13628951 (-) // 100.0 //
Probeset : 1628846_at
Accessions : protein= NP_650658;, nucleotide= NM_142401;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0038548.
BDGP gene expression has embryonic in situ data for CG17806: 6 pix of staining in 1 body parts.
Homophila reports that CG17806 is a close match (7e-11) to human gene TNDM1;ZFP57 (NP_001103279), a gene associated with Diabetes mellitus, transient neonatal, 1, 601410 (3).
BioGrid reports that CG17806 interacts with CG4840 .
TRiP has 1 RNAi stocks for FBgn0038548 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038548 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 44 of 4 1.40Up
Head21 24 of 4 0.40Down
Eye16 14 of 4 0.31Down
Thoracicoabdominal ganglion52 44 of 4 1.00None
Salivary gland88 44 of 4 1.67Up
Crop48 24 of 4 0.90None
Midgut41 24 of 4 0.80Down
Tubule46 24 of 4 0.90Down
Hindgut46 34 of 4 0.90None
Heart17 14 of 4 0.32Down
Fat body31 64 of 4 0.59Down
Ovary107 14 of 4 2.00Up
Testis15 04 of 4 0.30Down
Male accessory glands56 04 of 4 1.10None
Virgin spermatheca30 24 of 4 0.58Down
Mated spermatheca34 24 of 4 0.64Down
Adult carcass36 54 of 4 0.70Down
Larval CNS74 34 of 4 1.40Up
Larval Salivary gland35 44 of 4 0.66Down
Larval midgut33 24 of 4 0.62Down
Larval tubule59 54 of 4 1.10None
Larval hindgut25 24 of 4 0.48Down
Larval fat body42 34 of 4 0.80Down
Larval trachea30 04 of 4 0.57Down
Larval carcass26 24 of 4 0.50Down
S2 cells (growing)39 14 of 4 0.74Down
Whole fly53 24 of 4

Looking for CG17806-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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