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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17814-RA through 18771 annotations produced 1 hits



Dm-peritrophin-15a (Peritrophin-15a):

Annotation Number : CG17814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040959
Gbrowse : chr2L:8395660-8396084 (-) // 100.0 //
Probeset : 1636622_at
Accessions : protein= NP_524983;, nucleotide= NM_080244;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0008061 // chitin binding // inferred from sequence
FlyMine data for FBgn0040959.
VDRC has 4 RNAi stocks for FBgn0040959 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.00Down
Head9 ± 10 of 4 0.00Down
Eye11 ± 51 of 4 0.01Down
Thoracicoabdominal ganglion10 ± 30 of 4 0.00Down
Salivary gland22 ± 40 of 4 0.02Down
Crop15 ± 20 of 4 0.00Down
Midgut4938 ± 1524 of 4 4.50Up
Tubule13 ± 10 of 4 0.00Down
Hindgut208 ± 114 of 4 0.20Down
Heart6 ± 00 of 4 0.01Down
Fat body13 ± 70 of 4 0.01Down
Ovary2 ± 00 of 4 0.00Down
Testis5 ± 10 of 4 0.00Down
Male accessory glands22 ± 100 of 4 0.00Down
Virgin spermatheca11 ± 00 of 4 0.01Down
Mated spermatheca9 ± 10 of 4 0.01Down
Adult carcass16 ± 50 of 4 0.00Down
Larval CNS13 ± 70 of 4 0.01Down
Larval Salivary gland10 ± 30 of 4 0.01Down
Larval midgut5113 ± 2464 of 4 4.66Up
Larval tubule214 ± 774 of 4 0.20Down
Larval hindgut3531 ± 254 of 4 3.22Up
Larval fat body4 ± 20 of 4 0.00Down
Larval trachea4 ± 20 of 4 0.00Down
Larval carcass14 ± 10 of 4 0.01Down
S2 cells (growing)6 ± 00 of 4 0.01Down
Whole fly1096 ± 974 of 4

Looking for CG17814-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime