Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17819-RA through 18771 annotations produced 1 hits



(CG17819):

Annotation Number : CG17819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038915
Gbrowse : chr3R:17710432-17711272 (-) // 100.0 //
Probeset : 1638262_at
Accessions : protein= NP_650994;, nucleotide= NM_142737;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0038915.
BDGP gene expression has embryonic in situ data for CG17819: 4 pix of staining in 1 body parts.
Homophila reports that CG17819 is a close match (1e-14) to human gene CMRD;SAR1B;SARA2 (NP_057187), a gene associated with Anderson disease, 607689 (3);Chylomicron retention disease, 246700 (3).
BioGrid reports that CG17819 interacts with CG18067 CG4328 CG4993 CG5492 CG6284 CG7548 CG9127 .
VDRC has 5 RNAi stocks for FBgn0038915 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 20 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.07Down
Crop5 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule10 ± 10 of 4 0.20Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body3 ± 10 of 4 0.06Down
Ovary2 ± 10 of 4 0.00Down
Testis783 ± 134 of 415.50Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca4 ± 00 of 4 0.10Down
Mated spermatheca3 ± 10 of 4 0.07Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland3 ± 00 of 4 0.07Down
Larval midgut2 ± 10 of 4 0.06Down
Larval tubule5 ± 20 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.05Down
Larval fat body91 ± 403 of 4 1.80None
Larval trachea3 ± 31 of 4 0.06Down
Larval carcass4 ± 10 of 4 0.09Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly50 ± 34 of 4

Looking for CG17819-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime