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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17820-RA through 18771 annotations produced 1 hits



female-specific independent of transformer (fit):

Annotation Number : CG17820
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038914
Gbrowse : chr3R:17709639-17710176 (-) // 100.0 //
Probeset : 1627088_at
Accessions : protein= NP_650993;, nucleotide= NM_142736;
FlyMine data for FBgn0038914.
BDGP gene expression has embryonic in situ data for CG17820: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038914 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 ± 164 of 4 0.40Down
Head3134 ± 1414 of 4 8.00Up
Eye2323 ± 9474 of 4 5.92None
Thoracicoabdominal ganglion164 ± 224 of 4 0.40Down
Salivary gland41 ± 152 of 4 0.11Down
Crop72 ± 144 of 4 0.20Down
Midgut11 ± 40 of 4 0.00Down
Tubule45 ± 332 of 4 0.10Down
Hindgut34 ± 44 of 4 0.10Down
Heart2293 ± 5284 of 4 5.84Up
Fat body4236 ± 9904 of 410.79Up
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca4715 ± 1644 of 412.01Up
Mated spermatheca2711 ± 3724 of 4 6.90Up
Adult carcass2793 ± 3244 of 4 7.10Up
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule11 ± 22 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.00Down
Larval fat body5 ± 20 of 4 0.00Down
Larval trachea53 ± 1051 of 4 0.14Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly392 ± 524 of 4

Looking for CG17820-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime