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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17821-RA through 18771 annotations produced 1 hits



(CG17821):

Annotation Number : CG17821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034383
Gbrowse : chr2R:14631304-14632501 (-) // 100.0 //
Probeset : 1634728_at
Accessions : protein= NP_725820;, nucleotide= NM_166304;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0034383.
Homophila reports that CG17821 is a close match (2e-36) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 2 RNAi stocks for FBgn0034383 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.20Down
Head8 ± 10 of 4 0.30Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion9 ± 30 of 4 0.30Down
Salivary gland20 ± 30 of 4 0.72None
Crop8 ± 30 of 4 0.30Down
Midgut8 ± 40 of 4 0.30Down
Tubule8 ± 00 of 4 0.30Down
Hindgut10 ± 11 of 4 0.40Down
Heart22 ± 34 of 4 0.83None
Fat body33 ± 134 of 4 1.22None
Ovary6 ± 01 of 4 0.20Down
Testis290 ± 54 of 410.50Up
Male accessory glands12 ± 21 of 4 0.50Down
Virgin spermatheca9 ± 11 of 4 0.34Down
Mated spermatheca8 ± 20 of 4 0.29Down
Adult carcass34 ± 43 of 4 1.20None
Larval CNS7 ± 11 of 4 0.28Down
Larval Salivary gland10 ± 00 of 4 0.37Down
Larval midgut15 ± 20 of 4 0.54Down
Larval tubule12 ± 10 of 4 0.40Down
Larval hindgut9 ± 11 of 4 0.36Down
Larval fat body36 ± 93 of 4 1.30None
Larval trachea6 ± 51 of 4 0.22Down
Larval carcass11 ± 10 of 4 0.43Down
S2 cells (growing)7 ± 01 of 4 0.26Down
Whole fly27 ± 24 of 4

Looking for CG17821-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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