FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17838-RA through 18771 annotations produced 1 hits

(CG17838):

Annotation Number : CG17838
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038826
Gbrowse : chr3R:16582450-16631962 (+) // 100.0 //
Probeset : 1634792_s_at
Accessions : protein= NP_001097848; /// NP_001097849; /// NP_650913; /// NP_732555; /// NP_732556; /// NP_732557; /// NP_732558; /// NP_732559;, nucleotide= NM_001104378; /// NM_001104379; /// NM_142656; /// NM_169925; /// NM_169926; /// NM_169927; /// NM_169928; /// NM_169929;
Pathway : via spliceosome // inferred by curator"
Interpro : 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from sequence or structural similarity /// 007101
FlyMine data for FBgn0038826.
BDGP gene expression has embryonic in situ data for CG17838: 23 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0038826 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	614 ± 20	4 of 4	2.20	Up
Head	477 ± 38	4 of 4	1.70	Up
Eye	338 ± 39	4 of 4	1.19	None
Thoracicoabdominal ganglion	877 ± 69	4 of 4	3.10	Up
Salivary gland	342 ± 47	4 of 4	1.21	None
Crop	541 ± 37	4 of 4	1.90	Up
Midgut	221 ± 13	4 of 4	0.80	Down
Tubule	176 ± 3	4 of 4	0.60	Down
Hindgut	392 ± 18	4 of 4	1.40	Up
Heart	229 ± 14	4 of 4	0.81	Down
Fat body	273 ± 79	4 of 4	0.97	None
Ovary	19 ± 2	1 of 4	0.10	Down
Testis	1136 ± 36	4 of 4	4.00	Up
Male accessory glands	326 ± 13	4 of 4	1.20	None
Virgin spermatheca	96 ± 6	1 of 4	0.34	Down
Mated spermatheca	123 ± 4	2 of 4	0.43	Down
Adult carcass	427 ± 27	4 of 4	1.50	Up
Larval CNS	913 ± 93	4 of 4	3.22	Up
Larval Salivary gland	479 ± 38	4 of 4	1.69	Up
Larval midgut	128 ± 13	4 of 4	0.45	Down
Larval tubule	1760 ± 116	4 of 4	6.20	Up
Larval hindgut	228 ± 14	4 of 4	0.81	Down
Larval fat body	1761 ± 112	4 of 4	6.20	Up
Larval trachea	317 ± 42	4 of 4	1.12	None
Larval carcass	544 ± 91	4 of 4	1.92	None
S2 cells (growing)	269 ± 4	4 of 4	0.95	None
Whole fly	283 ± 15	4 of 4

Looking for CG17838-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720