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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17840-RA through 18771 annotations produced 1 hits



(CG17840):

Annotation Number : CG17840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031611
Gbrowse : chr2L:4465199-4468024 (+) // 100.0 //
Probeset : 1627938_at
Accessions : protein= NP_608841;, nucleotide= NM_134997;
FlyMine data for FBgn0031611.
BDGP gene expression has embryonic in situ data for CG17840: 4 pix of staining in 1 body parts.
Homophila reports that CG17840 is a close match (6e-175) to human gene FIG4;KIAA0274;SAC3 (NP_055660), a gene associated with Charcot-Marie-Tooth disease, type 4J, 611228 (3).
TRiP has 1 RNAi stocks for FBgn0031611 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031611 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 24 of 4 2.10Up
Head37 ± 04 of 4 1.00None
Eye42 ± 24 of 4 1.15None
Thoracicoabdominal ganglion77 ± 74 of 4 2.10Up
Salivary gland69 ± 34 of 4 1.88Up
Crop44 ± 44 of 4 1.20None
Midgut26 ± 10 of 4 0.70Down
Tubule32 ± 24 of 4 0.90Down
Hindgut36 ± 14 of 4 1.00None
Heart38 ± 34 of 4 1.06None
Fat body35 ± 84 of 4 0.97None
Ovary27 ± 14 of 4 0.70Down
Testis11 ± 01 of 4 0.30Down
Male accessory glands1225 ± 454 of 433.40Up
Virgin spermatheca42 ± 24 of 4 1.15None
Mated spermatheca51 ± 44 of 4 1.40Up
Adult carcass33 ± 13 of 4 0.90None
Larval CNS45 ± 34 of 4 1.25Up
Larval Salivary gland51 ± 32 of 4 1.40Up
Larval midgut35 ± 30 of 4 0.96None
Larval tubule42 ± 34 of 4 1.20None
Larval hindgut38 ± 24 of 4 1.06None
Larval fat body45 ± 34 of 4 1.20None
Larval trachea37 ± 54 of 4 1.03None
Larval carcass36 ± 44 of 4 1.00None
S2 cells (growing)30 ± 14 of 4 0.84Down
Whole fly36 ± 04 of 4

Looking for CG17840-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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