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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17855-RA through 18771 annotations produced 1 hits


Annotation Number : CG17855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032124
Gbrowse : chr2L:9540643-9541747 (+) // 100.0 //
Probeset : 1639990_at
Accessions : protein= NP_609294;, nucleotide= NM_135450;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032124.
BioGrid reports that CG17855 interacts with CG4730 CG8301 CG2960 CG17420 CG4087 CG4617 CG7386 CG8159 CG8580 .
VDRC has 2 RNAi stocks for FBgn0032124 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.40Down
Head2 00 of 4 0.20Down
Eye0 00 of 4 0.08Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland1 00 of 4 0.11Down
Crop2 00 of 4 0.20Down
Midgut200 74 of 417.20Up
Tubule53 23 of 4 4.60Up
Hindgut37 14 of 4 3.20Up
Heart19 13 of 4 1.68Up
Fat body1 00 of 4 0.10Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.20Down
Male accessory glands8 40 of 4 0.70None
Virgin spermatheca0 00 of 4 0.04Down
Mated spermatheca0 00 of 4 0.06Down
Adult carcass2 00 of 4 0.20Down
Larval CNS0 00 of 4 0.04Down
Larval Salivary gland4 20 of 4 0.35Down
Larval midgut153 144 of 413.19Up
Larval tubule191 54 of 416.40Up
Larval hindgut47 24 of 4 4.06Up
Larval fat body5 20 of 4 0.50Down
Larval trachea3 30 of 4 0.28Down
Larval carcass0 00 of 4 0.08Down
S2 cells (growing)1 00 of 4 0.10Down
Whole fly11 01 of 4

Looking for CG17855-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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