Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17856-RA through 18771 annotations produced 1 hits

Ubiquinol-cytochrome c reductase 14 kDa protein (CG17856):

Annotation Number : CG17856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039576
Gbrowse : chr3R:24119855-24120191 (+) // 100.0 //
Probeset : 1638403_at
Accessions : protein= NP_651614;, nucleotide= NM_143357;
Pathway : ubiquinol to cytochrome c // inferred from sequence or structural similarity /// 0006122 // mitochondrial electron tran
Interpro : ubiquinol to cytochrome c // inferred from electronic annotation /// 0008340 // determination of adult lifespan // infe
FlyMine data for FBgn0039576.
Homophila reports that CG17856 is a close match (1e-22) to human gene UQCRB;UQBP;QPC (NP_006285), a gene associated with Mitochondrial complex III deficiency, 124000 (3).
BioGrid reports that CG17856 interacts with CG8907 .
VDRC has 3 RNAi stocks for FBgn0039576 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.10Down
Head4 00 of 4 0.10Down
Eye3 10 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland8 20 of 4 0.15Down
Crop5 10 of 4 0.10Down
Midgut2 00 of 4 0.00Down
Tubule7 10 of 4 0.10Down
Hindgut5 20 of 4 0.10Down
Heart1 10 of 4 0.04Down
Fat body14 41 of 4 0.27Down
Ovary1 00 of 4 0.00Down
Testis711 484 of 413.30Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca8 01 of 4 0.15Down
Mated spermatheca8 30 of 4 0.17Down
Adult carcass6 20 of 4 0.10Down
Larval CNS6 42 of 4 0.13Down
Larval Salivary gland3 10 of 4 0.06Down
Larval midgut3 10 of 4 0.07Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut5 10 of 4 0.11Down
Larval fat body35 173 of 4 0.70None
Larval trachea6 71 of 4 0.12Down
Larval carcass3 10 of 4 0.06Down
S2 cells (growing)3 00 of 4 0.06Down
Whole fly53 14 of 4

Looking for CG17856-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime