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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17868-RB through 18771 annotations produced 2 hits



Odorant receptor 35a (Or35a):

Annotation Number : CG17868
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028946
Gbrowse : chr2L:15619663-15623558 (-) // 100.0 //
Probeset : 1631444_a_at
Accessions : protein= NP_723916;, nucleotide= NM_165117;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0028946.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.70None
Head10 12 of 4 6.20Up
Eye4 10 of 4 2.83None
Thoracicoabdominal ganglion2 10 of 4 1.30None
Salivary gland5 10 of 4 3.27None
Crop3 00 of 4 1.80None
Midgut3 10 of 4 1.80None
Tubule5 00 of 4 3.10Up
Hindgut3 10 of 4 2.30None
Heart0 00 of 4 0.23None
Fat body4 41 of 4 2.76None
Ovary1 00 of 4 0.60None
Testis2 10 of 4 1.70None
Male accessory glands5 20 of 4 3.20None
Virgin spermatheca2 10 of 4 1.52None
Mated spermatheca2 00 of 4 1.36None
Adult carcass2 10 of 4 1.60None
Larval CNS1 00 of 4 0.91None
Larval Salivary gland2 10 of 4 1.20None
Larval midgut3 10 of 4 2.12None
Larval tubule17 14 of 410.60Up
Larval hindgut2 10 of 4 1.61None
Larval fat body5 10 of 4 3.60None
Larval trachea1 10 of 4 0.62None
Larval carcass0 00 of 4 0.48None
S2 cells (growing)0 00 of 4 0.17None
Whole fly1 11 of 4



Odorant receptor 35a (Or35a):

Annotation Number : CG17868
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028946
Gbrowse : chr2L:15622127-15623558 (-) // 100.0 //
Probeset : 1623275_at
Accessions : protein= NP_723916;, nucleotide= NM_165117;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0028946.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head10 23 of 4 2.40None
Eye2 10 of 4 0.65None
Thoracicoabdominal ganglion5 00 of 4 1.20None
Salivary gland11 30 of 4 2.43None
Crop3 10 of 4 0.70None
Midgut11 12 of 4 2.40None
Tubule6 11 of 4 1.30None
Hindgut4 00 of 4 1.10None
Heart0 00 of 4 0.06None
Fat body7 22 of 4 1.67None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.20None
Male accessory glands6 00 of 4 1.40None
Virgin spermatheca1 00 of 4 0.27None
Mated spermatheca0 00 of 4 0.15None
Adult carcass5 20 of 4 1.20None
Larval CNS2 10 of 4 0.66None
Larval Salivary gland3 10 of 4 0.84None
Larval midgut15 14 of 4 3.40Up
Larval tubule62 84 of 413.70Up
Larval hindgut4 12 of 4 0.90None
Larval fat body2 00 of 4 0.60None
Larval trachea1 20 of 4 0.33None
Larval carcass1 00 of 4 0.39None
S2 cells (growing)1 00 of 4 0.36None
Whole fly4 21 of 4

Looking for CG17868-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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