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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17870-RB through 18771 annotations produced 1 hits



leonardo (14-3-3zeta):

Annotation Number : CG17870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004907
Gbrowse : chr2R:5987183-5997192 (+) // 100.0 //
Probeset : 1625148_s_at
Accessions : protein= NP_001014515; /// NP_001014516; /// NP_476885; /// NP_724884; /// NP_724885; /// NP_724886; /// NP_724887; /// NP_724888; /// NP_724889; /// NP_995792;, nucleotide= NM_001014515; /// NM_001014516; /// NM_057537; /// NM_165740; /// NM_165741; /// NM_165742; /// NM_165743; /// NM_165744; /// NM_165745; /// NM_206070;
Pathway : embryonic // inferred from mutant phenotype /// 0050821 // protein stabilization // inferred from direct assay /// 0050
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation ///
FlyMine data for FBgn0004907.
BioGrid reports that CG17870 interacts with CG4767 CG2934 CG31136 CG31634 CG31756 CG32672 CG3335 CG3954 CG40127 CG4059 CG4087 CG5174 CG5494 CG7176 CG7764 CG8470 CG8907 CG9184 CG1389 CG1389 CG7873 CG1945 CG3563 CG31196 CG31196 CG6772 CG10693 CG6772 .
TRiP has 3 RNAi stocks for FBgn0004907 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004907 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2503 1164 of 413.10Up
Head1093 354 of 4 5.70Up
Eye1411 1614 of 4 7.41Up
Thoracicoabdominal ganglion2502 924 of 413.10Up
Salivary gland53 64 of 4 0.28Down
Crop86 74 of 4 0.50Down
Midgut31 44 of 4 0.20Down
Tubule13 04 of 4 0.10Down
Hindgut53 24 of 4 0.30Down
Heart81 144 of 4 0.43Down
Fat body49 84 of 4 0.26Down
Ovary8 04 of 4 0.00Down
Testis11 14 of 4 0.10Down
Male accessory glands172 124 of 4 0.90None
Virgin spermatheca42 34 of 4 0.22Down
Mated spermatheca45 54 of 4 0.24Down
Adult carcass89 104 of 4 0.50Down
Larval CNS2143 1574 of 411.26Up
Larval Salivary gland131 134 of 4 0.69Down
Larval midgut36 14 of 4 0.19Down
Larval tubule91 64 of 4 0.50Down
Larval hindgut59 44 of 4 0.31Down
Larval fat body53 84 of 4 0.30Down
Larval trachea79 474 of 4 0.42Down
Larval carcass99 44 of 4 0.52Down
S2 cells (growing)88 44 of 4 0.46Down
Whole fly190 134 of 4

Looking for CG17870-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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