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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17883-RA through 18771 annotations produced 1 hits



(CG17883):

Annotation Number : CG17883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040005
Gbrowse : chr2R:559361-561145 (+) // 100.0 //
Probeset : 1623591_a_at
Accessions : protein= NP_001036448; /// NP_001036449;, nucleotide= NM_001042983; /// NM_001042984;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0040005.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain711 ± 144 of 4 2.10Up
Head375 ± 154 of 4 1.10None
Eye541 ± 124 of 4 1.63Up
Thoracicoabdominal ganglion679 ± 124 of 4 2.10Up
Salivary gland694 ± 144 of 4 2.10Up
Crop339 ± 94 of 4 1.00None
Midgut314 ± 94 of 4 0.90None
Tubule484 ± 114 of 4 1.50Up
Hindgut293 ± 34 of 4 0.90Down
Heart260 ± 74 of 4 0.79Down
Fat body279 ± 144 of 4 0.84Down
Ovary632 ± 84 of 4 1.90Up
Testis151 ± 74 of 4 0.50Down
Male accessory glands712 ± 124 of 4 2.20Up
Virgin spermatheca520 ± 224 of 4 1.57Up
Mated spermatheca565 ± 384 of 4 1.71Up
Adult carcass254 ± 84 of 4 0.80Down
Larval CNS497 ± 364 of 4 1.50Up
Larval Salivary gland843 ± 254 of 4 2.54Up
Larval midgut269 ± 84 of 4 0.81Down
Larval tubule424 ± 144 of 4 1.30Up
Larval hindgut365 ± 94 of 4 1.10Up
Larval fat body462 ± 124 of 4 1.40Up
Larval trachea317 ± 44 of 4 0.96None
Larval carcass325 ± 124 of 4 0.98None
S2 cells (growing)431 ± 104 of 4 1.30Up
Whole fly331 ± 64 of 4

Looking for CG17883-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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