FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17885-RA through 18771 annotations produced 1 hits

Odorant receptor 1a (Or1a):

Annotation Number : CG17885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029521
Gbrowse : chrX:209155-210590 (+) // 100.0 //
Probeset : 1631797_at
Accessions : protein= NP_525029;, nucleotide= NM_080290;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0029521.
VDRC has 3 RNAi stocks for FBgn0029521 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	3.10	None
Head	5 ± 2	0 of 4	4.50	None
Eye	0 ± 0	0 of 4	0.45	None
Thoracicoabdominal ganglion	4 ± 2	0 of 4	3.10	None
Salivary gland	13 ± 4	0 of 4	10.02	None
Crop	3 ± 2	0 of 4	2.70	None
Midgut	0 ± 0	0 of 4	0.50	None
Tubule	1 ± 0	0 of 4	1.30	None
Hindgut	2 ± 0	0 of 4	1.80	None
Heart	6 ± 1	0 of 4	4.92	None
Fat body	7 ± 5	0 of 4	5.81	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	1 ± 0	0 of 4	0.90	None
Male accessory glands	3 ± 2	0 of 4	2.80	None
Virgin spermatheca	44 ± 5	1 of 4	33.42	Up
Mated spermatheca	51 ± 3	1 of 4	38.79	Up
Adult carcass	2 ± 0	0 of 4	1.50	None
Larval CNS	1 ± 1	0 of 4	1.49	None
Larval Salivary gland	2 ± 1	0 of 4	1.49	None
Larval midgut	0 ± 0	0 of 4	0.64	None
Larval tubule	3 ± 1	0 of 4	2.30	None
Larval hindgut	0 ± 0	0 of 4	0.64	None
Larval fat body	4 ± 2	0 of 4	3.00	None
Larval trachea	0 ± 0	0 of 4	0.55	None
Larval carcass	0 ± 0	0 of 4	0.74	None
S2 cells (growing)	57 ± 2	4 of 4	43.02	Up
Whole fly	1 ± 0	0 of 4

Looking for CG17885-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720