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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17903-RA through 18771 annotations produced 1 hits



cytochrome c (Cyt-c-p):

Annotation Number : CG17903
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000409
Gbrowse : chr2L:16719873-16722659 (+) // 100.0 //
Probeset : 1641049_at
Accessions : protein= NP_477176;, nucleotide= NM_057828;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotati
Interpro : "0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0000409.
BDGP gene expression has embryonic in situ data for Cyt-c-p: 15 pix of staining in 14 body parts.
Homophila reports that CG17903 is a close match (3e-40) to human gene (NP_061820), a gene associated with .
BioGrid reports that CG17903 interacts with CG5792 CG30044 CG30497 CG3114 CG4795 CG5494 CG6667 CG6891 CG8292 CG8884 CG9014 CG9060 CG9506 CG9665 .
VDRC has 2 RNAi stocks for FBgn0000409 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2817 ± 724 of 4 1.00None
Head2437 ± 1054 of 4 0.90None
Eye2525 ± 1084 of 4 0.92None
Thoracicoabdominal ganglion3788 ± 1644 of 4 1.40Up
Salivary gland2981 ± 1364 of 4 1.09None
Crop2579 ± 1924 of 4 0.90None
Midgut2640 ± 904 of 4 1.00None
Tubule3496 ± 1864 of 4 1.30Up
Hindgut4139 ± 304 of 4 1.50Up
Heart3383 ± 2144 of 4 1.24Up
Fat body3065 ± 2514 of 4 1.12None
Ovary1650 ± 304 of 4 0.60Down
Testis293 ± 114 of 4 0.10Down
Male accessory glands714 ± 604 of 4 0.30Down
Virgin spermatheca2354 ± 1494 of 4 0.86None
Mated spermatheca2442 ± 1674 of 4 0.89None
Adult carcass5673 ± 3774 of 4 2.10Up
Larval CNS1625 ± 1624 of 4 0.60Down
Larval Salivary gland1615 ± 594 of 4 0.59Down
Larval midgut2516 ± 3594 of 4 0.92None
Larval tubule470 ± 424 of 4 0.20Down
Larval hindgut2691 ± 2164 of 4 0.99None
Larval fat body199 ± 344 of 4 0.10Down
Larval trachea1323 ± 2734 of 4 0.48Down
Larval carcass2123 ± 3164 of 4 0.78None
S2 cells (growing)2565 ± 474 of 4 0.94None
Whole fly2732 ± 1194 of 4

Looking for CG17903-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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