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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17905-RA through 18771 annotations produced 1 hits



CG17905 (ChLD3):

Annotation Number : CG17905
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032598
Gbrowse : chr2L:16738851-16742610 (+) // 99.82 //
Probeset : 1633710_at
Accessions : protein= NP_609806;, nucleotide= NM_135962;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0008061 // chitin binding // inferred from ele
FlyMine data for FBgn0032598.
BDGP gene expression has embryonic in situ data for CG17905: 11 pix of staining in 9 body parts.
VDRC has 1 RNAi stocks for FBgn0032598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head6 12 of 4 0.60Down
Eye8 12 of 4 0.70None
Thoracicoabdominal ganglion7 21 of 4 0.60None
Salivary gland11 40 of 4 0.91None
Crop12 04 of 4 1.00None
Midgut6 12 of 4 0.50Down
Tubule5 01 of 4 0.50Down
Hindgut9 14 of 4 0.70None
Heart7 12 of 4 0.58Down
Fat body10 22 of 4 0.87None
Ovary11 03 of 4 0.90None
Testis36 14 of 4 3.00Up
Male accessory glands11 13 of 4 0.90None
Virgin spermatheca8 00 of 4 0.70Down
Mated spermatheca6 12 of 4 0.56Down
Adult carcass11 30 of 4 0.90None
Larval CNS50 154 of 4 4.17Up
Larval Salivary gland15 14 of 4 1.29None
Larval midgut9 10 of 4 0.77None
Larval tubule10 04 of 4 0.90None
Larval hindgut14 14 of 4 1.18None
Larval fat body20 34 of 4 1.70None
Larval trachea19 54 of 4 1.62None
Larval carcass37 14 of 4 3.08Up
S2 cells (growing)11 23 of 4 0.91None
Whole fly12 14 of 4

Looking for CG17905-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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