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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1791-RA through 18771 annotations produced 1 hits



Fibrinogen-related protein (CG1791):

Annotation Number : CG1791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030163
Gbrowse : chrX:9857485-9858911 (-) // 100.0 //
Probeset : 1627669_at
Accessions : protein= NP_001096930; /// NP_572591;, nucleotide= NM_001103460; /// NM_132363;
Interpro : 0005102 // receptor binding // inferred from electronic annotation
FlyMine data for FBgn0030163.
Homophila reports that CG1791 is a close match (1e-17) to human gene FGG (NP_068656), a gene associated with Dysfibrinogenemia, gamma type (3);Hypofibrinogenemia, gamma type (3);Thrombophilia, dysfibrinogenemic (3).
VDRC has 2 RNAi stocks for FBgn0030163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head174 ± 164 of 4 7.90Up
Eye199 ± 64 of 4 9.01Up
Thoracicoabdominal ganglion4 ± 20 of 4 0.20Down
Salivary gland1 ± 00 of 4 0.09Down
Crop72 ± 64 of 4 3.30Up
Midgut2 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut32 ± 44 of 4 1.50None
Heart5 ± 00 of 4 0.25Down
Fat body10 ± 30 of 4 0.45Down
Ovary0 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.05Down
Mated spermatheca4 ± 10 of 4 0.20Down
Adult carcass172 ± 94 of 4 7.80Up
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut4 ± 00 of 4 0.19Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea2 ± 40 of 4 0.13Down
Larval carcass1 ± 00 of 4 0.07Down
S2 cells (growing)2 ± 10 of 4 0.13Down
Whole fly22 ± 04 of 4

Looking for CG1791-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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