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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17917-RA through 18771 annotations produced 1 hits


(CG17917):

Annotation Number : CG17917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037431
Gbrowse : chr3R:2167722-2168558 (+) // 100.0 //
Probeset : 1635965_at
Accessions : protein= NP_649642;, nucleotide= NM_141385;
Interpro : 0008429 // phosphatidylethanolamine binding // inferred from sequence or structural similarity
FlyMine data for FBgn0037431.
VDRC has 3 RNAi stocks for FBgn0037431 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.29Down
Crop2 ± 00 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.06Down
Fat body2 ± 20 of 4 0.11Down
Ovary2 ± 00 of 4 0.10Down
Testis379 ± 114 of 416.10Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.06Down
Mated spermatheca5 ± 30 of 4 0.25Down
Adult carcass3 ± 00 of 4 0.10Down
Larval CNS4 ± 00 of 4 0.17Down
Larval Salivary gland5 ± 20 of 4 0.21Down
Larval midgut4 ± 10 of 4 0.20Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.12Down
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea1 ± 00 of 4 0.05Down
Larval carcass2 ± 00 of 4 0.12Down
S2 cells (growing)3 ± 20 of 4 0.14Down
Whole fly23 ± 14 of 4

Looking for CG17917-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime