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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17919-RA through 18771 annotations produced 1 hits


Annotation Number : CG17919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037433
Gbrowse : chr3R:2169752-2170818 (+) // 100.0 //
Probeset : 1628252_at
Accessions : protein= NP_649644;, nucleotide= NM_141387;
Interpro : 0008429 // phosphatidylethanolamine binding // inferred from sequence or structural similarity
FlyMine data for FBgn0037433.
BDGP gene expression has embryonic in situ data for CG17919: 10 pix of staining in 2 body parts.
BioGrid reports that CG17919 interacts with CG3225 CG6945 .
VDRC has 3 RNAi stocks for FBgn0037433 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 24 of 4 0.10Down
Head972 454 of 4 5.40Up
Eye289 334 of 4 1.61Up
Thoracicoabdominal ganglion13 22 of 4 0.10Down
Salivary gland148 194 of 4 0.83None
Crop2604 954 of 414.60Up
Midgut95 54 of 4 0.50Down
Tubule8 10 of 4 0.00Down
Hindgut1635 504 of 4 9.10Up
Heart59 34 of 4 0.33Down
Fat body30 104 of 4 0.17Down
Ovary9 13 of 4 0.10Down
Testis159 74 of 4 0.90None
Male accessory glands1173 1264 of 4 6.60Up
Virgin spermatheca111 74 of 4 0.62Down
Mated spermatheca136 84 of 4 0.76Down
Adult carcass669 324 of 4 3.70Up
Larval CNS14 24 of 4 0.08Down
Larval Salivary gland26 43 of 4 0.15Down
Larval midgut25 21 of 4 0.14Down
Larval tubule9 12 of 4 0.10Down
Larval hindgut230 64 of 4 1.29Up
Larval fat body116 274 of 4 0.70None
Larval trachea925 164 of 4 5.17Up
Larval carcass451 204 of 4 2.52Up
S2 cells (growing)9 12 of 4 0.05Down
Whole fly179 64 of 4

Looking for CG17919-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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