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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17924-RA through 18771 annotations produced 1 hits



Accessory gland-specific peptide 95EF (Acp95EF):

Annotation Number : CG17924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002863
Gbrowse : chr3R:20054377-20055378 (+) // 100.0 //
Probeset : 1634265_at
Accessions : protein= NP_524898;, nucleotide= NM_080159;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005179 // hormone activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physi
FlyMine data for FBgn0002863.
BioGrid reports that CG17924 interacts with CG9757 CG9675 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 14 of 4 0.20Down
Head22 34 of 4 0.30None
Eye54 64 of 4 0.73None
Thoracicoabdominal ganglion26 54 of 4 0.40None
Salivary gland115 174 of 4 1.54None
Crop40 34 of 4 0.50None
Midgut37 34 of 4 0.50None
Tubule22 14 of 4 0.30Down
Hindgut30 04 of 4 0.40None
Heart58 44 of 4 0.78None
Fat body50 54 of 4 0.68None
Ovary37 134 of 4 0.50None
Testis61 154 of 4 0.80None
Male accessory glands786 194 of 410.60Up
Virgin spermatheca63 44 of 4 0.85None
Mated spermatheca79 24 of 4 1.06None
Adult carcass84 154 of 4 1.10None
Larval CNS30 84 of 4 0.41None
Larval Salivary gland101 74 of 4 1.36None
Larval midgut53 74 of 4 0.72None
Larval tubule43 54 of 4 0.60None
Larval hindgut41 34 of 4 0.56None
Larval fat body58 44 of 4 0.80None
Larval trachea55 124 of 4 0.74None
Larval carcass41 64 of 4 0.55None
S2 cells (growing)36 24 of 4 0.49None
Whole fly74 184 of 4

Looking for CG17924-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime