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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17932-RA through 18771 annotations produced 1 hits



Ugt36Bc (Ugt36Bc):

Annotation Number : CG17932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040260
Gbrowse : chr2L:16799028-16801585 (+) // 100.0 //
Probeset : 1641191_s_at
Accessions : protein= NP_652627; /// NP_724013;, nucleotide= NM_144370; /// NM_165193;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0040260.
BDGP gene expression has embryonic in situ data for Ugt36Bc: 27 pix of staining in 15 body parts.
Homophila reports that CG17932 is a close match (3e-39) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 4 RNAi stocks for FBgn0040260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 ± 64 of 4 1.40Up
Head192 ± 64 of 4 1.90Up
Eye73 ± 14 of 4 0.73None
Thoracicoabdominal ganglion179 ± 54 of 4 1.80Up
Salivary gland14 ± 80 of 4 0.14Down
Crop684 ± 24 of 4 6.80Up
Midgut872 ± 454 of 4 8.70Up
Tubule178 ± 144 of 4 1.80Up
Hindgut224 ± 114 of 4 2.20Up
Heart68 ± 104 of 4 0.68None
Fat body59 ± 144 of 4 0.59Down
Ovary9 ± 00 of 4 0.10Down
Testis24 ± 24 of 4 0.20Down
Male accessory glands16 ± 51 of 4 0.20Down
Virgin spermatheca34 ± 34 of 4 0.34Down
Mated spermatheca44 ± 54 of 4 0.44Down
Adult carcass152 ± 74 of 4 1.50Up
Larval CNS22 ± 34 of 4 0.22Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut458 ± 234 of 4 4.56Up
Larval tubule24 ± 24 of 4 0.20Down
Larval hindgut47 ± 34 of 4 0.47Down
Larval fat body9 ± 30 of 4 0.10Down
Larval trachea67 ± 104 of 4 0.67None
Larval carcass125 ± 204 of 4 1.25None
S2 cells (growing)16 ± 34 of 4 0.16Down
Whole fly100 ± 134 of 4

Looking for CG17932-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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