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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17935-RA through 18771 annotations produced 1 hits



Male-specific RNA 84Dd (Mst84Dd):

Annotation Number : CG17935
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004175
Gbrowse : chr3R:3189016-3189495 (-) // 100.0 //
Probeset : 1639165_at
Accessions : protein= NP_524253;, nucleotide= NM_079529;
Interpro : 0009055 // electron carrier activity // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding /
FlyMine data for FBgn0004175.
BioGrid reports that CG17935 interacts with CG32705 .
VDRC has 3 RNAi stocks for FBgn0004175 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye3 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland11 ± 30 of 4 0.02Down
Crop5 ± 10 of 4 0.00Down
Midgut9 ± 40 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut8 ± 00 of 4 0.00Down
Heart3 ± 10 of 4 0.01Down
Fat body13 ± 32 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis2525 ± 184 of 4 4.00Up
Male accessory glands13 ± 30 of 4 0.00Down
Virgin spermatheca6 ± 10 of 4 0.01Down
Mated spermatheca8 ± 20 of 4 0.01Down
Adult carcass22 ± 51 of 4 0.00Down
Larval CNS4 ± 20 of 4 0.01Down
Larval Salivary gland6 ± 31 of 4 0.01Down
Larval midgut8 ± 10 of 4 0.01Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut6 ± 21 of 4 0.01Down
Larval fat body311 ± 1164 of 4 0.50None
Larval trachea25 ± 333 of 4 0.04Down
Larval carcass8 ± 21 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly627 ± 344 of 4

Looking for CG17935-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime