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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17941-RA through 18771 annotations produced 1 hits

dachsous (ds):

Annotation Number : CG17941
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000497
Gbrowse : chr2L:640020-714968 (-) // 100.0 //
Probeset : 1640627_at
Accessions : protein= NP_523446;, nucleotide= NM_078722;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035222 // wing disc pattern formation // inferred from muta
Interpro : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
FlyMine data for FBgn0000497.
Homophila reports that CG17941 is a close match (9e-14) to human gene DSG1 (NP_001933), a gene associated with Keratosis palmoplantaris striata I, 148700 (3).
BioGrid reports that CG17941 interacts with CG11579 CG10917 CG3352 CG17697 CG17697 .
TRiP has 2 RNAi stocks for FBgn0000497 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000497 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 12 of 4 0.40Down
Head26 24 of 4 2.40Up
Eye33 34 of 4 3.04Up
Thoracicoabdominal ganglion4 11 of 4 0.40None
Salivary gland3 00 of 4 0.35Down
Crop21 24 of 4 1.90Up
Midgut7 03 of 4 0.70None
Tubule4 00 of 4 0.40Down
Hindgut29 04 of 4 2.70Up
Heart6 13 of 4 0.56None
Fat body8 33 of 4 0.76None
Ovary1 00 of 4 0.20Down
Testis4 01 of 4 0.40Down
Male accessory glands11 10 of 4 1.10None
Virgin spermatheca8 04 of 4 0.82None
Mated spermatheca9 24 of 4 0.88None
Adult carcass20 33 of 4 1.80None
Larval CNS107 44 of 4 9.86Up
Larval Salivary gland7 21 of 4 0.65None
Larval midgut6 11 of 4 0.63None
Larval tubule3 02 of 4 0.30Down
Larval hindgut29 24 of 4 2.74Up
Larval fat body9 31 of 4 0.90None
Larval trachea94 94 of 4 8.68Up
Larval carcass60 104 of 4 5.54Up
S2 cells (growing)4 01 of 4 0.39Down
Whole fly10 14 of 4

Looking for CG17941-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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