Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17947-RA through 18771 annotations produced 1 hits



alpha-catenin (alpha-Cat):

Annotation Number : CG17947
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010215
Gbrowse : chr3L:23311773-23331205 (-) // 100.0 //
Probeset : 1632724_at
Accessions : protein= NP_524219;, nucleotide= NM_079495;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005198 // structural molecule activity
FlyMine data for FBgn0010215.
Homophila reports that CG17947 is a close match (1e-13) to human gene VCL;CMD1W (NP_054706), a gene associated with Cardiomyopathy, dilated, 1W, 611407 (3).
BioGrid reports that CG17947 interacts with CG8239 CG8286 CG8416 .
TRiP has 3 RNAi stocks for FBgn0010215 available for purchase.
VDRC has 4 RNAi stocks for FBgn0010215 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain849 144 of 4 2.00Up
Head435 294 of 4 1.00None
Eye442 284 of 4 1.04None
Thoracicoabdominal ganglion781 174 of 4 1.80Up
Salivary gland479 264 of 4 1.13None
Crop531 174 of 4 1.20Up
Midgut330 114 of 4 0.80Down
Tubule547 114 of 4 1.30Up
Hindgut403 84 of 4 0.90None
Heart245 134 of 4 0.58Down
Fat body205 294 of 4 0.48Down
Ovary862 204 of 4 2.00Up
Testis222 74 of 4 0.50Down
Male accessory glands497 114 of 4 1.20Up
Virgin spermatheca339 134 of 4 0.80Down
Mated spermatheca466 394 of 4 1.09None
Adult carcass212 24 of 4 0.50Down
Larval CNS1006 544 of 4 2.36Up
Larval Salivary gland544 204 of 4 1.28Up
Larval midgut395 154 of 4 0.93None
Larval tubule695 284 of 4 1.60Up
Larval hindgut588 214 of 4 1.38Up
Larval fat body408 344 of 4 1.00None
Larval trachea629 364 of 4 1.48Up
Larval carcass461 234 of 4 1.08None
S2 cells (growing)446 104 of 4 1.05None
Whole fly426 184 of 4

Looking for CG17947-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime